Variant report

Variant	rs13280521
Chromosome Location	chr8:66661074-66661075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66659420..66661277-chr8:66665077..66666654,2	K562	blood:
2	chr8:66653039..66654856-chr8:66659634..66662671,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10106749	0.92[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10111844	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10957358	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs11774586	1.00[YRI][hapmap]
rs13251307	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs13251608	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13274205	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs13275168	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs13281090	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13281981	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs17395275	0.96[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17396080	0.92[CEU][hapmap];0.86[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs34496943	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35411381	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4424306	0.92[CEU][hapmap]
rs62507608	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6472219	0.92[CEU][hapmap]
rs7007987	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7818909	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7822627	0.89[EUR][1000 genomes]
rs7822707	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7829434	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs869151	0.92[CEU][hapmap];1.00[CHD][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs9650151	0.82[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13280521	CTD-3025N20.3	cis	Artery Tibial	GTEx
rs13280521	ARMC1	cis	lymphoblastoid	seeQTL

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66621400-66673000	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:66624600-66661200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:66625600-66661400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr8:66626200-66664600	Strong transcription	Fetal Thymus	thymus
5	chr8:66628400-66663800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr8:66628400-66666600	Strong transcription	Dnd41	blood
7	chr8:66635200-66674000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:66635400-66673600	Weak transcription	Brain Substantia Nigra	brain
9	chr8:66635400-66673800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr8:66635400-66674000	Weak transcription	Fetal Brain Male	brain
11	chr8:66645600-66686000	Weak transcription	HSMM	muscle
12	chr8:66646800-66664400	Weak transcription	Osteobl	bone
13	chr8:66646800-66670200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:66647400-66664600	Weak transcription	Brain Germinal Matrix	brain
15	chr8:66647600-66662000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr8:66647600-66670800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:66647600-66673400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:66647800-66695200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr8:66648000-66668000	Weak transcription	Liver	Liver
20	chr8:66648600-66668000	Weak transcription	Fetal Brain Female	brain
21	chr8:66649000-66668000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr8:66649000-66690200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr8:66649600-66683800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr8:66650000-66671400	Weak transcription	Right Ventricle	heart
25	chr8:66651000-66671600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr8:66651000-66673600	Weak transcription	Brain Hippocampus Middle	brain
27	chr8:66651000-66676600	Weak transcription	Fetal Lung	lung
28	chr8:66651200-66673600	Weak transcription	Placenta	Placenta
29	chr8:66651400-66673800	Weak transcription	NHLF	lung
30	chr8:66651600-66662800	Weak transcription	Ovary	ovary
31	chr8:66651600-66662800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr8:66651600-66663200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr8:66651600-66671000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr8:66651600-66671000	Weak transcription	Fetal Stomach	stomach
35	chr8:66651600-66671200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr8:66651600-66672800	Weak transcription	Hela-S3	cervix
37	chr8:66651600-66673000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr8:66651600-66679400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr8:66651600-66690200	Weak transcription	NH-A	brain
40	chr8:66651800-66668000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr8:66651800-66668000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr8:66651800-66673800	Weak transcription	A549	lung
43	chr8:66653800-66661600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr8:66654200-66661200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr8:66654400-66662800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
46	chr8:66654600-66661200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr8:66654600-66662800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr8:66654600-66690200	Weak transcription	Lung	lung
49	chr8:66654800-66668000	Weak transcription	Psoas Muscle	Psoas
50	chr8:66655400-66661400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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