Variant report

Variant	rs7007987
Chromosome Location	chr8:66612989-66612990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10091345	0.81[EUR][1000 genomes]
rs10106749	1.00[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10111844	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10957358	0.92[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs11774586	1.00[YRI][hapmap]
rs13251307	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13274205	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13275168	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs13280521	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13281090	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13281981	0.92[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs17395275	0.96[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17396080	0.92[CEU][hapmap];0.86[GIH][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs34496943	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35411381	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4424306	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs62507608	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6472219	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs7007473	0.83[EUR][1000 genomes]
rs7818909	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7822627	0.94[EUR][1000 genomes]
rs7822707	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs7829434	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs869151	0.92[CEU][hapmap];1.00[CHD][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs9650151	0.82[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7007987	ARMC1	cis	lymphoblastoid	seeQTL
rs7007987	MTFR1	Cis_1M	lymphoblastoid	RTeQTL
rs7007987	CTD-3025N20.3	cis	Artery Tibial	GTEx

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66567200-66616800	Weak transcription	Gastric	stomach
2	chr8:66571800-66616800	Weak transcription	Esophagus	oesophagus
3	chr8:66571800-66619600	Weak transcription	Brain Hippocampus Middle	brain
4	chr8:66572000-66616600	Weak transcription	HMEC	breast
5	chr8:66572000-66617000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:66572000-66617600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr8:66572000-66617800	Weak transcription	NHDF-Ad	bronchial
8	chr8:66572000-66619600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:66572000-66619600	Weak transcription	NHEK	skin
10	chr8:66572000-66619800	Weak transcription	Lung	lung
11	chr8:66572000-66628400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr8:66572200-66619800	Weak transcription	A549	lung
13	chr8:66573800-66615200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr8:66573800-66630400	Weak transcription	Spleen	Spleen
15	chr8:66574400-66616800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:66580000-66619600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr8:66580400-66618600	Weak transcription	Osteobl	bone
18	chr8:66580400-66619800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr8:66580600-66619400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr8:66581000-66619600	Weak transcription	Fetal Lung	lung
21	chr8:66581200-66619400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr8:66582000-66616800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr8:66582200-66616800	Weak transcription	Right Ventricle	heart
24	chr8:66582800-66617800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr8:66583000-66616800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:66583600-66619800	Weak transcription	Brain Angular Gyrus	brain
27	chr8:66583800-66619800	Weak transcription	Aorta	Aorta
28	chr8:66584200-66620000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr8:66584800-66619800	Weak transcription	Brain Germinal Matrix	brain
30	chr8:66584800-66628600	Weak transcription	NHLF	lung
31	chr8:66585000-66617400	Weak transcription	HepG2	liver
32	chr8:66585600-66619400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:66587800-66628000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr8:66588200-66619600	Weak transcription	Brain Anterior Caudate	brain
35	chr8:66590200-66619800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr8:66591400-66617800	Weak transcription	Colon Smooth Muscle	Colon
37	chr8:66591600-66619800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr8:66592600-66615000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr8:66593400-66628400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr8:66593800-66630000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr8:66595400-66616600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr8:66595400-66619600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr8:66596200-66619400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr8:66596600-66617000	Weak transcription	Hela-S3	cervix
45	chr8:66596600-66619800	Weak transcription	HSMMtube	muscle
46	chr8:66597600-66628600	Weak transcription	Small Intestine	intestine
47	chr8:66599200-66633000	Weak transcription	Fetal Kidney	kidney
48	chr8:66602000-66627400	Weak transcription	Thymus	Thymus
49	chr8:66602800-66641800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr8:66602800-66650600	Weak transcription	Placenta Amnion	Placenta Amnion

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