Variant report

Variant	rs10957358
Chromosome Location	chr8:66502302-66502303
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr8:66502134-66502397	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000200714	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10091345	0.82[EUR][1000 genomes]
rs10106749	0.92[CEU][hapmap]
rs10957359	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11786598	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11992528	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13251307	0.96[CEU][hapmap]
rs13271817	0.86[EUR][1000 genomes]
rs13274205	0.96[CEU][hapmap]
rs13275168	0.96[CEU][hapmap]
rs13280521	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs13281090	0.96[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs13281981	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13282323	0.86[EUR][1000 genomes]
rs17395275	0.96[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs17396080	0.92[CEU][hapmap]
rs2357475	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28547533	0.86[EUR][1000 genomes]
rs28709439	0.85[EUR][1000 genomes]
rs4394432	0.90[EUR][1000 genomes]
rs4424306	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62507608	0.84[AMR][1000 genomes]
rs6472219	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6994889	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7007473	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7007987	0.92[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs7462352	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7818909	0.93[CEU][hapmap]
rs7822707	0.93[CEU][hapmap]
rs7829434	0.92[CEU][hapmap]
rs869151	0.92[CEU][hapmap]
rs9650151	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10957358	CTD-3025N20.3	cis	Artery Tibial	GTEx

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66491400-66505800	Weak transcription	Fetal Stomach	stomach
2	chr8:66491800-66512000	Weak transcription	Spleen	Spleen
3	chr8:66492000-66521000	Weak transcription	Lung	lung
4	chr8:66495800-66516600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:66497200-66505000	Weak transcription	Ovary	ovary
6	chr8:66497600-66512000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr8:66498000-66516000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:66498400-66507000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:66498400-66512200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:66498600-66507000	Weak transcription	Adipose Nuclei	Adipose
11	chr8:66498600-66516400	Weak transcription	Esophagus	oesophagus
12	chr8:66498800-66507000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:66498800-66521000	Weak transcription	Aorta	Aorta
14	chr8:66499000-66503400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:66499000-66507000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:66499000-66514800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:66499000-66521400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr8:66499200-66503200	Weak transcription	Brain Angular Gyrus	brain
19	chr8:66499200-66511000	Weak transcription	Brain Substantia Nigra	brain
20	chr8:66499200-66514200	Weak transcription	Osteobl	bone
21	chr8:66499200-66515400	Weak transcription	Brain Anterior Caudate	brain
22	chr8:66499200-66516400	Weak transcription	Gastric	stomach
23	chr8:66499200-66519200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr8:66499400-66503400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr8:66499400-66514200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr8:66499600-66512200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr8:66499800-66506800	Weak transcription	Placenta	Placenta
28	chr8:66499800-66514200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr8:66499800-66514800	Weak transcription	Primary B cells from cord blood	blood
30	chr8:66500000-66506800	Weak transcription	Primary T cells from cord blood	blood
31	chr8:66500000-66514000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr8:66500000-66514000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr8:66500000-66514200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr8:66500000-66515600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr8:66500000-66515800	Weak transcription	GM12878-XiMat	blood
36	chr8:66500000-66517400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr8:66500200-66514000	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr8:66500200-66514800	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr8:66500200-66515000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr8:66500400-66504800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:66500600-66512000	Weak transcription	Fetal Muscle Trunk	muscle
42	chr8:66500800-66512000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr8:66500800-66516400	Weak transcription	Fetal Muscle Leg	muscle
44	chr8:66500800-66524400	Weak transcription	Psoas Muscle	Psoas
45	chr8:66501000-66514200	Weak transcription	Left Ventricle	heart
46	chr8:66501000-66516400	Weak transcription	HSMMtube	muscle
47	chr8:66501400-66507600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr8:66501600-66512000	Weak transcription	Right Ventricle	heart
49	chr8:66501800-66507000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr8:66501800-66507000	Weak transcription	Liver	Liver

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