Variant report

Variant	rs10102573
Chromosome Location	chr8:66558415-66558416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:66544310..66548208-chr8:66554670..66559350,8	MCF-7	breast:
2	chr8:66557768..66559368-chr8:66571050..66573151,2	K562	blood:
3	chr8:66543941..66549000-chr8:66554498..66559366,10	MCF-7	breast:
4	chr8:66557301..66560077-chr8:66580234..66581875,2	K562	blood:
5	chr8:66556998..66559111-chr8:66700750..66703642,2	K562	blood:
6	chr8:66555236..66558809-chr8:66619620..66621771,3	K562	blood:
7	chr8:66555940..66558809-chr8:66619620..66621771,2	K562	blood:
8	chr8:66557005..66560077-chr8:66579109..66581875,3	K562	blood:
9	chr8:66557149..66559790-chr8:66561450..66563071,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000104442	Chromatin interaction
ENSG00000066855	Chromatin interaction
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10105283	1.00[ASW][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs10106749	0.80[LWK][hapmap];1.00[YRI][hapmap]
rs13251307	0.94[YRI][hapmap]
rs28515659	0.92[AFR][1000 genomes]
rs73693412	1.00[EUR][1000 genomes]
rs7829434	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10102573	DNAJC5B	cis	lymphoblastoid	seeQTL

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66555400-66558600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:66556000-66558600	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr8:66556600-66558600	Active TSS	Muscle Satellite Cultured Cells	--
4	chr8:66557600-66558600	Flanking Active TSS	Dnd41	blood
5	chr8:66557800-66558600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr8:66557800-66558600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr8:66557800-66558600	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr8:66557800-66558600	Enhancers	Fetal Heart	heart
9	chr8:66557800-66558600	Enhancers	Small Intestine	intestine
10	chr8:66557800-66558600	Flanking Active TSS	GM12878-XiMat	blood
11	chr8:66557800-66558800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr8:66557800-66559000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr8:66557800-66559400	Enhancers	Primary T cells from cord blood	blood
14	chr8:66557800-66559400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr8:66557800-66564400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr8:66558000-66558600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:66558000-66558600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr8:66558000-66558600	Enhancers	Brain Cingulate Gyrus	brain
19	chr8:66558000-66558600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr8:66558000-66558800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr8:66558000-66559000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr8:66558000-66559000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr8:66558000-66559400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr8:66558000-66559400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr8:66558000-66559600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:66558000-66559600	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr8:66558000-66559600	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr8:66558000-66561000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr8:66558000-66564200	Weak transcription	Psoas Muscle	Psoas
30	chr8:66558000-66565000	Weak transcription	Pancreas	Pancrea
31	chr8:66558000-66565200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr8:66558000-66567000	Weak transcription	Gastric	stomach
33	chr8:66558000-66567200	Weak transcription	Adipose Nuclei	Adipose
34	chr8:66558000-66567400	Weak transcription	Ovary	ovary
35	chr8:66558000-66568800	Weak transcription	Fetal Intestine Small	intestine
36	chr8:66558000-66569400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr8:66558000-66569600	Weak transcription	Esophagus	oesophagus
38	chr8:66558000-66571000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr8:66558000-66571000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr8:66558000-66571000	Weak transcription	Fetal Lung	lung
41	chr8:66558000-66571000	Weak transcription	Fetal Muscle Trunk	muscle
42	chr8:66558000-66571000	Weak transcription	Fetal Muscle Leg	muscle
43	chr8:66558000-66571000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr8:66558000-66571000	Weak transcription	Thymus	Thymus
45	chr8:66558000-66571000	Weak transcription	HSMMtube	muscle
46	chr8:66558000-66571000	Weak transcription	NH-A	brain
47	chr8:66558000-66571200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr8:66558000-66571200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr8:66558000-66571600	Weak transcription	Lung	lung
50	chr8:66558000-66582400	Weak transcription	Placenta	Placenta

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