Variant report

Variant	rs7833031
Chromosome Location	chr8:66645549-66645550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66645308..66647727-chr8:66649629..66652069,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10102473	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1022252	0.84[ASN][1000 genomes]
rs10504388	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10808746	1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs11775485	0.87[ASN][1000 genomes]
rs11996845	0.81[ASN][1000 genomes]
rs13275168	0.85[LWK][hapmap]
rs13275737	0.82[ASN][1000 genomes]
rs1473600	0.82[ASN][1000 genomes]
rs2048648	0.87[ASN][1000 genomes]
rs2175810	0.82[CHB][hapmap]
rs4737220	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs6983230	0.91[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6991731	0.82[CHB][hapmap]
rs7006732	0.91[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs7011464	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7011819	0.81[ASN][1000 genomes]
rs7842162	0.82[CHB][hapmap]
rs869151	0.87[LWK][hapmap];0.80[YRI][hapmap]
rs9298104	0.82[ASN][1000 genomes]
rs953593	0.91[CEU][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7833031	MTFR1	Cis_1M	lymphoblastoid	RTeQTL
rs7833031	MTFR1	cis	multi-tissue	Pritchard
rs7833031	MTFR1	cis	parietal	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66602800-66650600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:66617600-66646200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:66620800-66648800	Weak transcription	Psoas Muscle	Psoas
4	chr8:66621400-66673000	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:66624600-66661200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:66625600-66661400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:66626200-66652000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:66626200-66664600	Strong transcription	Fetal Thymus	thymus
9	chr8:66626400-66656600	Strong transcription	Primary T cells from cord blood	blood
10	chr8:66626600-66653600	Strong transcription	Primary B cells from peripheral blood	blood
11	chr8:66626600-66655600	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr8:66627200-66655000	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr8:66628000-66652000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr8:66628200-66660000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr8:66628200-66660200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:66628400-66650200	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr8:66628400-66651600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr8:66628400-66652400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:66628400-66652800	Strong transcription	Primary B cells from cord blood	blood
20	chr8:66628400-66663800	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr8:66628400-66666600	Strong transcription	Dnd41	blood
22	chr8:66630600-66646600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:66631400-66647600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr8:66633800-66653800	Weak transcription	K562	blood
25	chr8:66635000-66648800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr8:66635200-66645800	Weak transcription	Brain Angular Gyrus	brain
27	chr8:66635200-66646200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr8:66635200-66646400	Weak transcription	Brain Anterior Caudate	brain
29	chr8:66635200-66674000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr8:66635400-66646400	Weak transcription	Colonic Mucosa	Colon
31	chr8:66635400-66646600	Weak transcription	Pancreas	Pancrea
32	chr8:66635400-66654400	Weak transcription	Small Intestine	intestine
33	chr8:66635400-66673600	Weak transcription	Brain Substantia Nigra	brain
34	chr8:66635400-66673800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr8:66635400-66674000	Weak transcription	Fetal Brain Male	brain
36	chr8:66635600-66655000	Weak transcription	HSMMtube	muscle
37	chr8:66636600-66646200	Weak transcription	Hela-S3	cervix
38	chr8:66636600-66646400	Weak transcription	Fetal Kidney	kidney
39	chr8:66637000-66646400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr8:66637000-66650600	Weak transcription	Fetal Lung	lung
41	chr8:66637200-66645600	Weak transcription	Placenta	Placenta
42	chr8:66637800-66646800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr8:66638800-66647400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr8:66638800-66655600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr8:66639200-66654400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
46	chr8:66639800-66646400	Weak transcription	Esophagus	oesophagus
47	chr8:66640200-66646400	Weak transcription	Fetal Heart	heart
48	chr8:66640800-66652000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr8:66641200-66654400	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr8:66641800-66647600	Strong transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links