Variant report

Variant	rs4737220
Chromosome Location	chr8:66475186-66475187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10102473	0.90[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1022252	0.90[AFR][1000 genomes]
rs10504388	0.91[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10808746	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs11996845	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12156235	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13275737	0.90[AFR][1000 genomes]
rs16932226	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2175810	0.83[CHB][hapmap]
rs4236943	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4737740	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4737742	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6472207	0.83[ASN][1000 genomes]
rs6983230	0.91[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[AFR][1000 genomes]
rs6991731	0.83[CHB][hapmap]
rs7006732	0.91[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[AFR][1000 genomes]
rs7011819	0.90[AFR][1000 genomes]
rs7833031	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs7842162	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4737220	LOC286186	cis	brain	BrainEAC

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66474200-66475200	Active TSS	Brain Angular Gyrus	brain
2	chr8:66475000-66475200	Flanking Active TSS	Brain Anterior Caudate	brain
3	chr8:66475000-66475200	Flanking Active TSS	Brain Cingulate Gyrus	brain
4	chr8:66475000-66475200	Enhancers	Brain Hippocampus Middle	brain
5	chr8:66475000-66475200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
6	chr8:66475000-66475200	Flanking Active TSS	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links