Variant report

Variant	rs4236943
Chromosome Location	chr8:66497560-66497561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10102473	1.00[ASW][hapmap];0.81[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.96[TSI][hapmap];1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1022252	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10504388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808746	0.91[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs11775485	0.87[ASN][1000 genomes]
rs11996845	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12156235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13275737	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1473600	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16932226	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2048648	0.87[ASN][1000 genomes]
rs2175810	0.91[CHB][hapmap]
rs4737220	0.91[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs4737740	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4737742	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6983230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6991731	0.91[CHB][hapmap]
rs7006732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7011819	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7833031	0.91[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap]
rs7842162	0.91[CHB][hapmap]
rs9298104	0.92[ASN][1000 genomes]
rs9643393	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4236943	ARMC1	cis	lymphoblastoid	seeQTL
rs4236943	MTFR1	cis	cerebellum	SCAN
rs4236943	ARMC1	cis	cerebellum	SCAN
rs4236943	GGH	cis	parietal	SCAN
rs4236943	ARMC1	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66491400-66505800	Weak transcription	Fetal Stomach	stomach
2	chr8:66491800-66512000	Weak transcription	Spleen	Spleen
3	chr8:66492000-66521000	Weak transcription	Lung	lung
4	chr8:66495800-66516600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:66496200-66499200	Enhancers	Brain Angular Gyrus	brain
6	chr8:66496400-66499400	Enhancers	Brain Hippocampus Middle	brain
7	chr8:66496400-66499400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr8:66496600-66499400	Enhancers	Brain Cingulate Gyrus	brain
9	chr8:66496800-66497600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:66497000-66499200	Enhancers	Brain Substantia Nigra	brain
11	chr8:66497000-66499800	Enhancers	Placenta	Placenta
12	chr8:66497200-66498800	Weak transcription	Primary B cells from cord blood	blood
13	chr8:66497200-66505000	Weak transcription	Ovary	ovary
14	chr8:66497400-66498800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr8:66497400-66499000	Weak transcription	GM12878-XiMat	blood
16	chr8:66497400-66499400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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