Variant report

Variant	rs11775485
Chromosome Location	chr8:66628114-66628115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:66627988-66628224	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66627107..66628672-chr8:66653139..66655185,2	K562	blood:

Variant related genes	Relation type
ENSG00000272155	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10102473	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1022252	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10504388	0.87[ASN][1000 genomes]
rs10808746	0.89[ASN][1000 genomes]
rs11996845	0.90[ASN][1000 genomes]
rs12156235	0.87[ASN][1000 genomes]
rs13275737	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1473600	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2048648	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236943	0.87[ASN][1000 genomes]
rs6983230	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7006732	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7011464	0.84[ASN][1000 genomes]
rs7011819	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7833031	0.87[ASN][1000 genomes]
rs9298104	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs953593	0.85[ASN][1000 genomes]
rs9643393	0.98[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66572000-66628400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr8:66573800-66630400	Weak transcription	Spleen	Spleen
3	chr8:66584800-66628600	Weak transcription	NHLF	lung
4	chr8:66593400-66628400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr8:66593800-66630000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:66597600-66628600	Weak transcription	Small Intestine	intestine
7	chr8:66599200-66633000	Weak transcription	Fetal Kidney	kidney
8	chr8:66602800-66641800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:66602800-66650600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:66605600-66628400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr8:66606600-66639400	Weak transcription	Fetal Heart	heart
12	chr8:66611600-66634600	Weak transcription	Fetal Brain Male	brain
13	chr8:66612000-66629000	Weak transcription	Pancreas	Pancrea
14	chr8:66613400-66634600	Weak transcription	Colonic Mucosa	Colon
15	chr8:66616000-66628600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr8:66616000-66630400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr8:66616200-66628400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr8:66616600-66629800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr8:66617000-66628400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr8:66617600-66629000	Weak transcription	Fetal Intestine Small	intestine
21	chr8:66617600-66630400	Weak transcription	Gastric	stomach
22	chr8:66617600-66646200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr8:66617800-66630600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr8:66618000-66629000	Weak transcription	Esophagus	oesophagus
25	chr8:66618400-66628400	Weak transcription	Stomach Mucosa	stomach
26	chr8:66618600-66630400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr8:66620200-66628400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr8:66620200-66632000	Weak transcription	Brain Anterior Caudate	brain
29	chr8:66620200-66632800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr8:66620400-66628400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr8:66620400-66628400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr8:66620400-66628400	Weak transcription	NH-A	brain
33	chr8:66620400-66628600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr8:66620400-66628600	Weak transcription	Fetal Intestine Large	intestine
35	chr8:66620400-66629600	Weak transcription	HSMMtube	muscle
36	chr8:66620400-66630600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr8:66620400-66630800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr8:66620400-66630800	Weak transcription	Brain Hippocampus Middle	brain
39	chr8:66620400-66631400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr8:66620400-66631400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr8:66620600-66628200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr8:66620600-66629000	Weak transcription	HSMM	muscle
43	chr8:66620800-66628400	Weak transcription	Brain Germinal Matrix	brain
44	chr8:66620800-66628400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr8:66620800-66630200	Weak transcription	Right Ventricle	heart
46	chr8:66620800-66631200	Weak transcription	Placenta	Placenta
47	chr8:66620800-66632600	Weak transcription	Lung	lung
48	chr8:66620800-66633000	Weak transcription	Brain Angular Gyrus	brain
49	chr8:66620800-66648800	Weak transcription	Psoas Muscle	Psoas
50	chr8:66621000-66628200	Weak transcription	Primary hematopoietic stem cells	blood

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