Variant report

Variant	rs1473600
Chromosome Location	chr8:66546357-66546358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66544310..66548208-chr8:66554670..66559350,8	MCF-7	breast:
2	chr8:66543941..66549000-chr8:66554498..66559366,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066855	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10102473	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1022252	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10504388	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10808746	0.83[ASN][1000 genomes]
rs11775485	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11996845	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12156235	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13275737	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16932226	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2048648	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4236943	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4737740	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6983230	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006732	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011819	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7833031	0.82[ASN][1000 genomes]
rs9298104	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs953593	0.80[ASN][1000 genomes]
rs9643393	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66545000-66547600	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr8:66545000-66547600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:66545200-66547000	Active TSS	H9 Cell Line	embryonic stem cell
4	chr8:66545200-66547400	Active TSS	Psoas Muscle	Psoas
5	chr8:66545200-66547600	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr8:66545200-66547600	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr8:66545200-66547600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:66545400-66547200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:66545400-66547200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:66545400-66547200	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr8:66545400-66547200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:66545400-66547200	Active TSS	HSMMtube	muscle
13	chr8:66545400-66547400	Active TSS	H1 Cell Line	embryonic stem cell
14	chr8:66545400-66547400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:66545400-66547400	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr8:66545400-66547400	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr8:66545400-66547400	Active TSS	Fetal Kidney	kidney
18	chr8:66545400-66547400	Active TSS	Fetal Muscle Trunk	muscle
19	chr8:66545400-66547600	Active TSS	K562	blood
20	chr8:66545600-66546400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
21	chr8:66545600-66546400	Active TSS	Small Intestine	intestine
22	chr8:66545600-66546800	Active TSS	Esophagus	oesophagus
23	chr8:66545600-66546800	Active TSS	Lung	lung
24	chr8:66545600-66547000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr8:66545600-66547000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:66545600-66547000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr8:66545600-66547000	Active TSS	Placenta Amnion	Placenta Amnion
28	chr8:66545600-66547200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:66545600-66547200	Active TSS	Fetal Intestine Small	intestine
30	chr8:66545600-66547200	Active TSS	GM12878-XiMat	blood
31	chr8:66545600-66547400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr8:66545600-66547400	Active TSS	NHLF	lung
33	chr8:66545600-66547600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr8:66545600-66547600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr8:66545600-66547600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr8:66545600-66547600	Active TSS	HSMM	muscle
37	chr8:66545600-66547800	Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr8:66545600-66549400	Active TSS	A549	lung
39	chr8:66545800-66546800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr8:66545800-66546800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr8:66545800-66546800	Active TSS	Gastric	stomach
42	chr8:66545800-66546800	Active TSS	Thymus	Thymus
43	chr8:66545800-66547000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr8:66545800-66547000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr8:66545800-66547000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr8:66545800-66547000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr8:66545800-66547000	Active TSS	Colonic Mucosa	Colon
48	chr8:66545800-66547000	Active TSS	Left Ventricle	heart
49	chr8:66545800-66547000	Active TSS	Pancreas	Pancrea
50	chr8:66545800-66547000	Active TSS	Rectal Mucosa Donor 29	rectum

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