Variant report

Variant	rs4737740
Chromosome Location	chr8:66474867-66474868
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:65487356..65488176-chr8:66474016..66474937,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARMC1-1	chr8:66474841-66474901	XLOC_007105
2	lnc-ARMC1-1	chr8:66474841-66475015	ENSG00000254081.1

Extended variants
information (count: 23 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10102473	1.00[ASW][hapmap];0.81[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.89[MKK][hapmap];0.96[TSI][hapmap];1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1022252	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10504388	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10808746	0.82[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap]
rs11996845	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12156235	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13275737	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1473600	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16932226	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2175810	0.83[CHB][hapmap]
rs4236943	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4737220	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4737742	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6472207	0.85[ASN][1000 genomes]
rs6983230	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6991731	0.83[CHB][hapmap]
rs7006732	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7011819	0.90[AFR][1000 genomes]
rs7833031	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs7842162	0.83[CHB][hapmap]
rs9298104	0.81[ASN][1000 genomes]
rs9643393	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4737740	ARMC1	cis	lymphoblastoid	seeQTL
rs4737740	ARMC1	cis	parietal	SCAN
rs4737740	ARMC1	cis	cerebellum	SCAN
rs4737740	MTFR1	cis	cerebellum	SCAN
rs4737740	GGH	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66472800-66475000	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr8:66474200-66475000	Active TSS	Brain Hippocampus Middle	brain
3	chr8:66474200-66475200	Active TSS	Brain Angular Gyrus	brain
4	chr8:66474400-66475000	Active TSS	Brain Anterior Caudate	brain
5	chr8:66474400-66475000	Active TSS	Brain Cingulate Gyrus	brain
6	chr8:66474600-66475000	Active TSS	Brain Substantia Nigra	brain

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