Variant report
Variant | rs4737742 |
---|---|
Chromosome Location | chr8:66475963-66475964 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | POU2F2 | chr8:66475954-66476245 | GM12878 | blood: | n/a | n/a |
2 | SP1 | chr8:66475953-66476174 | GM12878 | blood: | n/a | n/a |
3 | PAX5 | chr8:66475959-66476169 | GM12878 | blood: | n/a | n/a |
4 | BCL11A | chr8:66475963-66476140 | GM12878 | blood: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000254081 | TF binding region |
rs_ID | r2[population] |
---|---|
rs10102473 | 0.89[AFR][1000 genomes] |
rs10504388 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs11996845 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs12156235 | 0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs16932226 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4236943 | 0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4737740 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6472207 | 0.81[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2761434 | chr8:65578467-66567678 | Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
No data |