Variant report

Variant	rs55709406
Chromosome Location	chr11:9556795-9556796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:9555607..9558694-chr11:9571396..9573627,3	K562	blood:
2	chr11:9555032..9556832-chr11:9587944..9589560,2	K562	blood:
3	chr11:9555332..9556950-chr11:9587020..9589560,2	K562	blood:
4	chr11:9481451..9483301-chr11:9556478..9558091,2	K562	blood:
5	chr11:9555561..9558737-chr11:9597660..9602826,4	K562	blood:
6	chr11:9549821..9553673-chr11:9553881..9558124,6	K562	blood:
7	chr11:9556608..9559728-chr11:9560496..9563324,3	K562	blood:
8	chr11:9555259..9558705-chr11:9585485..9589925,6	MCF-7	breast:
9	chr11:9556747..9558527-chr11:9605972..9608091,2	K562	blood:
10	chr11:9555438..9558737-chr11:9597660..9602826,4	K562	blood:
11	chr11:9556276..9557533-chr11:9634416..9635753,10	K562	blood:
12	chr11:9549975..9559413-chr11:9590114..9600515,26	MCF-7	breast:
13	chr11:9554823..9558413-chr11:9633918..9637025,5	K562	blood:
14	chr11:9547770..9558262-chr11:9588302..9599721,48	MCF-7	breast:
15	chr11:9554695..9557077-chr11:9586375..9588015,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000243869	Chromatin interaction
ENSG00000238387	Chromatin interaction
ENSG00000166483	Chromatin interaction
ENSG00000268403	Chromatin interaction
ENSG00000166478	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11042409	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61876801	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72854139	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9534600-9556800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:9538800-9562000	Weak transcription	Small Intestine	intestine
3	chr11:9547600-9569800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:9547800-9557000	Weak transcription	Spleen	Spleen
5	chr11:9547800-9586600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:9549400-9581000	Weak transcription	Primary B cells from cord blood	blood
7	chr11:9549800-9578200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr11:9550600-9586600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:9551000-9581200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr11:9551200-9570600	Weak transcription	Thymus	Thymus
11	chr11:9551400-9556800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:9551400-9562600	Weak transcription	Pancreas	Pancrea
13	chr11:9551400-9582600	Weak transcription	Primary T cells from cord blood	blood
14	chr11:9551600-9556800	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:9551600-9556800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:9551800-9573400	Weak transcription	Right Ventricle	heart
17	chr11:9553000-9573400	Weak transcription	Gastric	stomach
18	chr11:9554600-9557000	Enhancers	Fetal Intestine Large	intestine
19	chr11:9554600-9557200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:9554800-9556800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:9554800-9556800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr11:9554800-9556800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr11:9554800-9556800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr11:9554800-9557000	Enhancers	NHEK	skin
25	chr11:9554800-9557200	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr11:9554800-9557200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:9554800-9557200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr11:9554800-9557200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr11:9554800-9557200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:9554800-9557200	Enhancers	Fetal Heart	heart
31	chr11:9554800-9557400	Enhancers	Placenta	Placenta
32	chr11:9555000-9556800	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr11:9555000-9557200	Enhancers	NHLF	lung
34	chr11:9555200-9557200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr11:9555200-9557200	Enhancers	Placenta Amnion	Placenta Amnion
36	chr11:9555200-9559600	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:9555200-9571800	Weak transcription	Ovary	ovary
38	chr11:9555400-9556800	Weak transcription	Brain Hippocampus Middle	brain
39	chr11:9555400-9556800	Weak transcription	K562	blood
40	chr11:9555400-9557000	Enhancers	Stomach Smooth Muscle	stomach
41	chr11:9555400-9558400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:9555600-9557200	Enhancers	HMEC	breast
43	chr11:9555800-9556800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:9555800-9556800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:9555800-9557400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:9556000-9557000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:9556000-9557000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:9556000-9557000	Enhancers	A549	lung
49	chr11:9556000-9557200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:9556200-9557000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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