Variant report

Variant	rs61876801
Chromosome Location	chr11:9554462-9554463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9552590..9554469-chr11:9597460..9599554,2	K562	blood:
2	chr11:9482191..9484017-chr11:9553347..9556317,2	K562	blood:
3	chr11:9553327..9556356-chr11:9558618..9561853,3	K562	blood:
4	chr11:9549821..9553673-chr11:9553881..9558124,6	K562	blood:
5	chr11:9549975..9559413-chr11:9590114..9600515,26	MCF-7	breast:
6	chr11:9547770..9558262-chr11:9588302..9599721,48	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166483	Chromatin interaction
ENSG00000166478	Chromatin interaction
ENSG00000238387	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11042409	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55709406	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72854139	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9534600-9556800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:9535800-9554800	Weak transcription	Ovary	ovary
3	chr11:9536400-9554800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:9538800-9562000	Weak transcription	Small Intestine	intestine
5	chr11:9545000-9555000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:9547400-9556400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:9547600-9569800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr11:9547800-9557000	Weak transcription	Spleen	Spleen
9	chr11:9547800-9586600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:9548200-9554800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:9549400-9555600	Weak transcription	HMEC	breast
12	chr11:9549400-9556200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:9549400-9581000	Weak transcription	Primary B cells from cord blood	blood
14	chr11:9549600-9555000	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:9549800-9554800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:9549800-9578200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr11:9550600-9556400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr11:9550600-9556400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr11:9550600-9586600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:9550800-9554800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:9550800-9554800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr11:9550800-9554800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:9551000-9554800	Weak transcription	NH-A	brain
24	chr11:9551000-9581200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:9551200-9556200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr11:9551200-9556400	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr11:9551200-9570600	Weak transcription	Thymus	Thymus
28	chr11:9551400-9554800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:9551400-9554800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:9551400-9554800	Weak transcription	Osteobl	bone
31	chr11:9551400-9555000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:9551400-9556200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:9551400-9556400	Weak transcription	NHDF-Ad	bronchial
34	chr11:9551400-9556800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:9551400-9562600	Weak transcription	Pancreas	Pancrea
36	chr11:9551400-9582600	Weak transcription	Primary T cells from cord blood	blood
37	chr11:9551600-9554800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr11:9551600-9555200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:9551600-9556800	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr11:9551600-9556800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:9551800-9554600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr11:9551800-9554800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:9551800-9555000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:9551800-9555000	Weak transcription	NHLF	lung
45	chr11:9551800-9556000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:9551800-9556200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:9551800-9573400	Weak transcription	Right Ventricle	heart
48	chr11:9552000-9554800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:9552000-9554800	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr11:9552000-9554800	Weak transcription	Fetal Muscle Leg	muscle

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