Variant report

Variant	rs55709523
Chromosome Location	chr18:45259917-45259918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs56229381	1.00[AMR][1000 genomes]
rs57068919	1.00[AMR][1000 genomes]
rs58270038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58295111	1.00[AMR][1000 genomes]
rs60628515	1.00[AMR][1000 genomes]
rs73439737	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439740	1.00[AMR][1000 genomes]
rs73439744	1.00[AMR][1000 genomes]
rs73439749	1.00[AMR][1000 genomes]
rs73439750	1.00[AMR][1000 genomes]
rs73439768	1.00[AMR][1000 genomes]
rs73439776	1.00[AMR][1000 genomes]
rs73439785	1.00[AMR][1000 genomes]
rs73439787	1.00[AMR][1000 genomes]
rs73439800	1.00[AMR][1000 genomes]
rs73441731	1.00[AMR][1000 genomes]
rs73441746	1.00[AMR][1000 genomes]
rs73441792	1.00[AMR][1000 genomes]
rs73441797	1.00[AMR][1000 genomes]
rs73443904	1.00[AMR][1000 genomes]
rs73443909	1.00[AMR][1000 genomes]
rs73443953	1.00[AMR][1000 genomes]
rs73953296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73953298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73953299	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv576823	chr18:45207893-45264035	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3410497	chr18:45258054-45261252	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45249800-45261400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:45258200-45260200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr18:45259800-45260000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links