Variant report
| Variant | rs57068919 |
|---|---|
| Chromosome Location | chr18:45283549-45283550 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr18:44741647..44742571-chr18:45282845..45283682,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs55709523 | 1.00[AMR][1000 genomes] |
| rs56229381 | 1.00[AMR][1000 genomes] |
| rs58270038 | 1.00[AMR][1000 genomes] |
| rs58295111 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60628515 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73439737 | 1.00[AMR][1000 genomes] |
| rs73439740 | 1.00[AMR][1000 genomes] |
| rs73439744 | 1.00[AMR][1000 genomes] |
| rs73439749 | 1.00[AMR][1000 genomes] |
| rs73439750 | 1.00[AMR][1000 genomes] |
| rs73439768 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73439776 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73439784 | 1.00[AFR][1000 genomes] |
| rs73439785 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73439787 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73439800 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73441731 | 1.00[AMR][1000 genomes] |
| rs73441746 | 1.00[AMR][1000 genomes] |
| rs73441792 | 1.00[AMR][1000 genomes] |
| rs73441797 | 1.00[AMR][1000 genomes] |
| rs73443904 | 1.00[AMR][1000 genomes] |
| rs73443909 | 1.00[AMR][1000 genomes] |
| rs73443953 | 1.00[AMR][1000 genomes] |
| rs73953296 | 1.00[AMR][1000 genomes] |
| rs73953298 | 1.00[AMR][1000 genomes] |
| rs73953299 | 1.00[AMR][1000 genomes] |
| rs8083595 | 1.00[AMR][1000 genomes] |
| rs8098327 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3425854 | chr18:45188942-45336590 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:45282800-45300600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr18:45283200-45284000 | Weak transcription | Gastric | stomach |
