Variant report

Variant	rs8098327
Chromosome Location	chr18:45487885-45487886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56229381	1.00[AMR][1000 genomes]
rs57068919	1.00[AMR][1000 genomes]
rs58295111	1.00[AMR][1000 genomes]
rs60628515	1.00[AMR][1000 genomes]
rs73439768	1.00[AMR][1000 genomes]
rs73439776	1.00[AMR][1000 genomes]
rs73439785	1.00[AMR][1000 genomes]
rs73439787	1.00[AMR][1000 genomes]
rs73439800	1.00[AMR][1000 genomes]
rs73441731	1.00[AMR][1000 genomes]
rs73441746	1.00[AMR][1000 genomes]
rs73441792	1.00[AMR][1000 genomes]
rs73441797	1.00[AMR][1000 genomes]
rs73443904	1.00[AMR][1000 genomes]
rs73443909	1.00[AMR][1000 genomes]
rs73443953	1.00[AMR][1000 genomes]
rs8083595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909615	chr18:45452321-45493026	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45478000-45490800	Weak transcription	Pancreas	Pancrea
2	chr18:45480400-45494000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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