Variant report

Variant	rs55711894
Chromosome Location	chr20:24128524-24128525
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11698401	0.88[EUR][1000 genomes]
rs11700115	0.88[EUR][1000 genomes]
rs12480796	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17823542	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2180377	0.81[EUR][1000 genomes]
rs6049428	0.81[EUR][1000 genomes]
rs6049433	0.81[EUR][1000 genomes]
rs68142535	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7266951	0.88[EUR][1000 genomes]
rs7267756	0.93[EUR][1000 genomes]
rs7268314	0.88[EUR][1000 genomes]
rs7268544	0.89[EUR][1000 genomes]
rs7270353	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8118858	0.88[EUR][1000 genomes]
rs8123050	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2755330	chr20:24114903-24130700	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24123400-24130800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr20:24125000-24129000	Weak transcription	Esophagus	oesophagus
3	chr20:24126400-24128600	Enhancers	Liver	Liver
4	chr20:24127200-24130000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr20:24127200-24130200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr20:24127400-24129200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr20:24127400-24129600	Weak transcription	NHEK	skin
8	chr20:24127400-24130600	Weak transcription	Pancreas	Pancrea
9	chr20:24128000-24131200	ZNF genes & repeats	Dnd41	blood
10	chr20:24128200-24129200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr20:24128400-24129200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr20:24128400-24129200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr20:24128400-24130600	Enhancers	Primary T cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links