Variant report

Variant	rs7268544
Chromosome Location	chr20:24145613-24145614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1009811	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11698401	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11700115	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs127801	0.82[CEU][hapmap]
rs1496400	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[YRI][hapmap]
rs1587200	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs17823542	0.88[EUR][1000 genomes]
rs55711894	0.89[EUR][1000 genomes]
rs6049433	0.84[CEU][hapmap]
rs6076202	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68142535	0.90[EUR][1000 genomes]
rs7266951	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7267756	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7268314	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7270353	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs7272205	0.85[AMR][1000 genomes]
rs8118858	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8123050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24134400-24146800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24144000-24146200	Enhancers	HUVEC	blood vessel
3	chr20:24145200-24146800	Enhancers	Colon Smooth Muscle	Colon
4	chr20:24145200-24147400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr20:24145200-24147400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr20:24145400-24146400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr20:24145400-24147800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr20:24145400-24148000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr20:24145600-24145800	Enhancers	Fetal Thymus	thymus
10	chr20:24145600-24146400	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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