Variant report

Variant	rs557121383
Chromosome Location	chr4:55105576-55105577
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008793	chr4:55060925-55535807	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv537098	chr4:55060925-55535807	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1002905	chr4:55093677-55115698	Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2763361	chr4:55102425-55107618	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv1011682	chr4:55103816-55128149	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	esv3361986	chr4:55104114-55121279	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
7	nsv997422	chr4:55104743-55132489	Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55101200-55105800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:55101200-55106400	Weak transcription	Right Atrium	heart
3	chr4:55101400-55110200	Weak transcription	Fetal Kidney	kidney
4	chr4:55102600-55106200	Enhancers	Ovary	ovary
5	chr4:55102800-55106200	Enhancers	Placenta	Placenta
6	chr4:55102800-55109000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:55103400-55107000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
8	chr4:55103400-55110000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:55103800-55105800	Weak transcription	Fetal Stomach	stomach
10	chr4:55103800-55106200	Weak transcription	Fetal Lung	lung
11	chr4:55104000-55109400	Strong transcription	Osteobl	bone
12	chr4:55104000-55110000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:55104200-55105600	Weak transcription	NHDF-Ad	bronchial
14	chr4:55104200-55106200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:55104200-55106400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:55104200-55110200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:55104400-55106200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:55105000-55106400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:55105000-55106400	Weak transcription	NHLF	lung
20	chr4:55105200-55105600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr4:55105200-55105600	Enhancers	Aorta	Aorta
22	chr4:55105200-55105800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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