Variant report

Variant	rs55712536
Chromosome Location	chr6:72222343-72222344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17548083	1.00[AFR][1000 genomes]
rs55993527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56067555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72220600-72222800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:72221800-72222600	Flanking Active TSS	HSMMtube	muscle
3	chr6:72222000-72223000	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr6:72222000-72223200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr6:72222000-72223200	Enhancers	HSMM	muscle
6	chr6:72222200-72222400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:72222200-72222400	Enhancers	Aorta	Aorta
8	chr6:72222200-72223000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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