Variant report

Variant	rs55713877
Chromosome Location	chr1:172857667-172857668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11801183	0.95[AFR][1000 genomes]
rs12123262	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12142280	0.88[AFR][1000 genomes]
rs61828386	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6665826	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3587	chr1:172836950-172882218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172852600-172862400	Weak transcription	Pancreas	Pancrea
2	chr1:172855400-172862400	Weak transcription	NH-A	brain
3	chr1:172855600-172861800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:172855600-172861800	Weak transcription	Hela-S3	cervix
5	chr1:172856800-172861600	Weak transcription	HUVEC	blood vessel
6	chr1:172857000-172858200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:172857000-172862000	Weak transcription	A549	lung
8	chr1:172857000-172862400	Weak transcription	Stomach Mucosa	stomach
9	chr1:172857600-172857800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr1:172857600-172857800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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