Variant report

Variant	rs61828386
Chromosome Location	chr1:172863647-172863648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172859088..172861490-chr1:172863508..172865755,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11801183	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12123262	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142280	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55713877	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6665826	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3587	chr1:172836950-172882218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172862000-172864000	Enhancers	A549	lung
2	chr1:172862000-172864200	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr1:172862200-172863800	Enhancers	Dnd41	blood
4	chr1:172862200-172864400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:172862400-172863800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr1:172862400-172863800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr1:172862400-172863800	Enhancers	GM12878-XiMat	blood
8	chr1:172862400-172863800	Enhancers	NHEK	skin
9	chr1:172862600-172863800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr1:172862600-172863800	Weak transcription	Adipose Nuclei	Adipose
11	chr1:172862600-172865200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:172862800-172863800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:172862800-172863800	Weak transcription	Fetal Thymus	thymus
14	chr1:172862800-172864000	Weak transcription	HSMM	muscle
15	chr1:172862800-172864200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:172862800-172864200	Weak transcription	Ovary	ovary
17	chr1:172862800-172864400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:172862800-172864400	Weak transcription	NH-A	brain
19	chr1:172862800-172866800	Weak transcription	HMEC	breast
20	chr1:172863000-172864000	Weak transcription	Right Atrium	heart
21	chr1:172863000-172864000	Enhancers	Hela-S3	cervix
22	chr1:172863000-172864200	Enhancers	HUVEC	blood vessel
23	chr1:172863000-172864200	Weak transcription	NHDF-Ad	bronchial
24	chr1:172863000-172864400	Weak transcription	Osteobl	bone
25	chr1:172863200-172863800	Weak transcription	Psoas Muscle	Psoas
26	chr1:172863200-172864000	Weak transcription	Small Intestine	intestine
27	chr1:172863200-172864200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:172863400-172863800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr1:172863400-172863800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr1:172863400-172863800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr1:172863400-172863800	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr1:172863400-172864000	Enhancers	Primary B cells from cord blood	blood
33	chr1:172863400-172864000	Enhancers	Primary T cells from cord blood	blood
34	chr1:172863400-172864000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr1:172863400-172864200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr1:172863400-172864200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr1:172863400-172864400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr1:172863400-172864600	Enhancers	K562	blood
39	chr1:172863400-172865200	Enhancers	Primary B cells from peripheral blood	blood
40	chr1:172863400-172865200	Enhancers	Primary hematopoietic stem cells	blood
41	chr1:172863600-172863800	Enhancers	Primary T cells fromperipheralblood	blood
42	chr1:172863600-172864200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
43	chr1:172863600-172864200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr1:172863600-172864200	Enhancers	Muscle Satellite Cultured Cells	--
45	chr1:172863600-172864200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr1:172863600-172864200	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr1:172863600-172864200	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr1:172863600-172864200	Enhancers	NHLF	lung
49	chr1:172863600-172864600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
50	chr1:172863600-172864600	Enhancers	Thymus	Thymus

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