Variant report

Variant	rs55714917
Chromosome Location	chr2:184917471-184917472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1526219	0.96[EUR][1000 genomes]
rs62175082	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62175083	0.88[EUR][1000 genomes]
rs62175085	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62175086	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62175087	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62175088	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62175089	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62175090	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62175091	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62175092	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62175131	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62175133	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62175134	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62175135	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62176497	0.88[EUR][1000 genomes]
rs6760578	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72891521	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72891554	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72891598	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72893274	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7577854	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002074	chr2:184697897-184955330	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv875487	chr2:184737282-185186670	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv997475	chr2:184828307-184993186	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv583991	chr2:184855828-184954425	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv819438	chr2:184916897-184921503	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184912800-184918000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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