Variant report

Variant	rs62175135
Chromosome Location	chr2:184944840-184944841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:184940537..184943180-chr2:184944058..184946845,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1526219	0.92[EUR][1000 genomes]
rs17731073	1.00[ASN][1000 genomes]
rs55714917	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62174979	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62174980	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62174981	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175015	1.00[ASN][1000 genomes]
rs62175045	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175046	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175047	1.00[ASN][1000 genomes]
rs62175048	1.00[ASN][1000 genomes]
rs62175049	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175050	1.00[ASN][1000 genomes]
rs62175051	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175082	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175083	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175085	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175086	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175087	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175088	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175089	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175090	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175091	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175131	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62176497	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62176538	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62176540	1.00[ASN][1000 genomes]
rs62176541	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62176543	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62176545	1.00[ASN][1000 genomes]
rs62176546	1.00[ASN][1000 genomes]
rs62176548	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62176549	1.00[ASN][1000 genomes]
rs62177370	1.00[ASN][1000 genomes]
rs62177383	1.00[ASN][1000 genomes]
rs62177384	1.00[ASN][1000 genomes]
rs6760578	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72891521	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72891554	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72891598	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72893274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901145	1.00[ASN][1000 genomes]
rs7561543	1.00[ASN][1000 genomes]
rs7567939	1.00[ASN][1000 genomes]
rs7575587	1.00[ASN][1000 genomes]
rs7577854	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7583823	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002074	chr2:184697897-184955330	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv875487	chr2:184737282-185186670	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv997475	chr2:184828307-184993186	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv583991	chr2:184855828-184954425	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv517730	chr2:184938401-184954425	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv834482	chr2:184939548-185066635	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv962121	chr2:184943035-184956833	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184937400-184945800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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