Variant report

Variant	rs62176541
Chromosome Location	chr2:185014071-185014072
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10177173	1.00[ASN][1000 genomes]
rs17731073	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62174979	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62174980	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62174981	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62175015	1.00[ASN][1000 genomes]
rs62175045	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175046	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175047	1.00[ASN][1000 genomes]
rs62175048	1.00[ASN][1000 genomes]
rs62175049	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175050	1.00[ASN][1000 genomes]
rs62175051	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175082	1.00[ASN][1000 genomes]
rs62175083	1.00[ASN][1000 genomes]
rs62175085	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175086	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175087	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175088	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175089	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175090	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175091	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175092	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175131	1.00[ASN][1000 genomes]
rs62175133	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175134	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62175135	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62176409	1.00[ASN][1000 genomes]
rs62176410	1.00[ASN][1000 genomes]
rs62176436	1.00[ASN][1000 genomes]
rs62176437	1.00[ASN][1000 genomes]
rs62176440	1.00[ASN][1000 genomes]
rs62176441	1.00[ASN][1000 genomes]
rs62176497	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62176538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62176540	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62176543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62176545	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62176546	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62176548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62176549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177370	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177383	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177384	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6760578	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72891521	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72891554	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72891598	1.00[ASN][1000 genomes]
rs72893274	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72901145	1.00[ASN][1000 genomes]
rs72902858	1.00[ASN][1000 genomes]
rs72902859	1.00[ASN][1000 genomes]
rs72902897	1.00[ASN][1000 genomes]
rs72904818	1.00[ASN][1000 genomes]
rs7561543	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7567939	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7575587	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7577854	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7583823	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875487	chr2:184737282-185186670	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv834482	chr2:184939548-185066635	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv998904	chr2:184955270-185318483	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1012174	chr2:184956114-185316664	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv875488	chr2:184975795-185091908	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv459976	chr2:184995947-185067733	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv583993	chr2:184995947-185316457	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
8	esv3357510	chr2:185013986-185014111	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185009000-185018400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:185013800-185014200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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