Variant report

Variant	rs55715777
Chromosome Location	chr2:205547453-205547454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10490271	1.00[AMR][1000 genomes]
rs11891335	1.00[AMR][1000 genomes]
rs57163622	1.00[AMR][1000 genomes]
rs73984266	0.87[AFR][1000 genomes]
rs73984271	1.00[AMR][1000 genomes]
rs73984273	1.00[AMR][1000 genomes]
rs73984279	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875722	chr2:205462099-205572718	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875723	chr2:205489653-205612846	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv584243	chr2:205539092-205630618	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2757846	chr2:205539832-205841174	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2759111	chr2:205539832-205841174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205539800-205547600	Weak transcription	HUVEC	blood vessel
2	chr2:205543600-205548200	Weak transcription	Fetal Intestine Small	intestine
3	chr2:205544800-205547600	Enhancers	HSMM	muscle
4	chr2:205545200-205547600	Enhancers	Colon Smooth Muscle	Colon
5	chr2:205545600-205547600	Enhancers	Fetal Lung	lung
6	chr2:205545600-205560800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr2:205546000-205547600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr2:205546400-205547600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:205546400-205549400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:205546600-205547600	Enhancers	Stomach Smooth Muscle	stomach
11	chr2:205546600-205548000	Weak transcription	Liver	Liver
12	chr2:205546600-205551200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:205546600-205551600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:205546800-205550800	Weak transcription	NHDF-Ad	bronchial
15	chr2:205547000-205550200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr2:205547000-205550800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr2:205547000-205555000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:205547000-205556400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:205547400-205560000	Weak transcription	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links