Variant report

Variant	rs73984266
Chromosome Location	chr2:205538400-205538401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:205528626..205531544-chr2:205538166..205540869,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10171959	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10490269	1.00[EUR][1000 genomes]
rs10490270	1.00[EUR][1000 genomes]
rs16836501	1.00[EUR][1000 genomes]
rs16836517	1.00[EUR][1000 genomes]
rs17595168	1.00[EUR][1000 genomes]
rs17595196	1.00[EUR][1000 genomes]
rs41425446	1.00[EUR][1000 genomes]
rs41440444	1.00[EUR][1000 genomes]
rs55715777	0.87[AFR][1000 genomes]
rs57991840	1.00[EUR][1000 genomes]
rs58870976	1.00[EUR][1000 genomes]
rs6751997	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875722	chr2:205462099-205572718	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875723	chr2:205489653-205612846	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205520800-205542800	Weak transcription	Psoas Muscle	Psoas
2	chr2:205521000-205546200	Weak transcription	Aorta	Aorta
3	chr2:205528000-205546200	Weak transcription	Pancreas	Pancrea
4	chr2:205531000-205538400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:205531200-205538400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:205531200-205545200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:205531600-205539000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:205532200-205539800	Enhancers	HUVEC	blood vessel
9	chr2:205534800-205538800	Weak transcription	NHLF	lung
10	chr2:205535200-205545200	Weak transcription	Colon Smooth Muscle	Colon
11	chr2:205535400-205542200	Weak transcription	HSMMtube	muscle
12	chr2:205535400-205545600	Weak transcription	Fetal Lung	lung
13	chr2:205535800-205538400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr2:205536000-205538400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr2:205537400-205539800	Genic enhancers	HSMM	muscle
16	chr2:205537800-205538400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr2:205537800-205539200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr2:205538000-205538800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr2:205538000-205538800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr2:205538000-205538800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:205538000-205539200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr2:205538000-205539200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr2:205538000-205539400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr2:205538000-205539400	Enhancers	NHEK	skin
25	chr2:205538000-205539600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr2:205538200-205538400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr2:205538200-205539000	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr2:205538200-205539200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr2:205538200-205539200	Enhancers	NHDF-Ad	bronchial
30	chr2:205538200-205539400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr2:205538200-205539400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr2:205538200-205539400	Enhancers	NH-A	brain
33	chr2:205538200-205539400	Enhancers	Osteobl	bone
34	chr2:205538400-205538600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr2:205538400-205538800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr2:205538400-205538800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr2:205538400-205539200	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr2:205538400-205539200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr2:205538400-205539200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr2:205538400-205539600	Enhancers	HUES64 Cell Line	embryonic stem cell

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