Variant report

Variant	rs55720331
Chromosome Location	chr8:120184700-120184701
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:120183937..120185450-chr8:120190160..120192136,2	MCF-7	breast:
2	chr8:120183437..120185122-chr8:120187205..120189919,2	MCF-7	breast:
3	chr8:120182916..120184889-chr8:120187238..120189541,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13251028	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254750	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13258520	0.82[EUR][1000 genomes]
rs13269610	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13269850	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271541	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17179200	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17179583	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17180638	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34093940	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34182057	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34411131	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34444965	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35396477	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35398753	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4434650	1.00[ASN][1000 genomes]
rs4460404	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4537331	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55688196	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56413724	1.00[ASN][1000 genomes]
rs67852317	1.00[ASN][1000 genomes]
rs7012132	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71532417	0.86[ASN][1000 genomes]
rs72682437	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72682456	1.00[ASN][1000 genomes]
rs72682459	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758169	chr8:119943309-120275750	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2759639	chr8:119943309-120275750	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv6363	chr8:120150231-120188957	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv982083	chr8:120180351-120187700	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120183400-120188800	Weak transcription	Duodenum Mucosa	Duodenum

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