Variant report
| Variant | rs71532417 |
|---|---|
| Chromosome Location | chr8:120085700-120085701 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs13251028 | 0.86[ASN][1000 genomes] |
| rs13254750 | 0.86[ASN][1000 genomes] |
| rs13269610 | 0.86[ASN][1000 genomes] |
| rs13269850 | 0.86[ASN][1000 genomes] |
| rs13271541 | 0.86[ASN][1000 genomes] |
| rs13276474 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs13282510 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs16891976 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17179200 | 0.86[ASN][1000 genomes] |
| rs17179583 | 0.86[ASN][1000 genomes] |
| rs17180638 | 0.86[ASN][1000 genomes] |
| rs34093940 | 0.86[ASN][1000 genomes] |
| rs34182057 | 0.86[ASN][1000 genomes] |
| rs34327040 | 0.83[ASN][1000 genomes] |
| rs34411131 | 0.86[ASN][1000 genomes] |
| rs34444965 | 0.86[ASN][1000 genomes] |
| rs35396477 | 0.86[ASN][1000 genomes] |
| rs35398753 | 0.86[ASN][1000 genomes] |
| rs35574102 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4317610 | 0.83[EUR][1000 genomes] |
| rs4434650 | 0.86[ASN][1000 genomes] |
| rs4460404 | 0.86[ASN][1000 genomes] |
| rs4537331 | 0.86[ASN][1000 genomes] |
| rs55688196 | 0.86[ASN][1000 genomes] |
| rs55720331 | 0.86[ASN][1000 genomes] |
| rs56413724 | 0.86[ASN][1000 genomes] |
| rs67852317 | 0.86[ASN][1000 genomes] |
| rs7012132 | 0.86[ASN][1000 genomes] |
| rs71532418 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72682437 | 0.86[ASN][1000 genomes] |
| rs72682456 | 0.86[ASN][1000 genomes] |
| rs72682459 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv868916 | chr8:119911943-120762250 | Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 2 | esv2758169 | chr8:119943309-120275750 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 3 | esv2759639 | chr8:119943309-120275750 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:120084600-120095200 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
