Variant report

Variant	rs55722030
Chromosome Location	chr7:16767354-16767355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16764185..16768614-chr7:16775638..16778113,4	K562	blood:
2	chr7:16758524..16760636-chr7:16767169..16768678,2	MCF-7	breast:
3	chr7:16762489..16765300-chr7:16767112..16769471,2	K562	blood:
4	chr7:16684507..16686880-chr7:16766055..16768198,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235837	Chromatin interaction
ENSG00000136261	Chromatin interaction
ENSG00000106524	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1149516	1.00[EUR][1000 genomes]
rs1149517	1.00[EUR][1000 genomes]
rs1149518	1.00[EUR][1000 genomes]
rs1149520	1.00[EUR][1000 genomes]
rs1149521	1.00[EUR][1000 genomes]
rs1149523	1.00[EUR][1000 genomes]
rs1149525	1.00[EUR][1000 genomes]
rs2177784	1.00[EUR][1000 genomes]
rs56302012	1.00[EUR][1000 genomes]
rs57776102	1.00[EUR][1000 genomes]
rs6968207	1.00[EUR][1000 genomes]
rs706054	1.00[EUR][1000 genomes]
rs706056	1.00[EUR][1000 genomes]
rs706058	1.00[EUR][1000 genomes]
rs706060	1.00[EUR][1000 genomes]
rs706066	1.00[EUR][1000 genomes]
rs706067	1.00[EUR][1000 genomes]
rs706068	1.00[EUR][1000 genomes]
rs706069	1.00[EUR][1000 genomes]
rs73067698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069705	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73069707	1.00[EUR][1000 genomes]
rs73069710	1.00[EUR][1000 genomes]
rs73069712	1.00[EUR][1000 genomes]
rs73069719	1.00[EUR][1000 genomes]
rs73069720	1.00[EUR][1000 genomes]
rs73069724	1.00[EUR][1000 genomes]
rs73069745	1.00[EUR][1000 genomes]
rs73069748	1.00[EUR][1000 genomes]
rs73069757	1.00[EUR][1000 genomes]
rs818492	1.00[EUR][1000 genomes]
rs818807	1.00[EUR][1000 genomes]
rs818808	1.00[EUR][1000 genomes]
rs819003	1.00[EUR][1000 genomes]
rs866565	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv830912	chr7:16623196-16791974	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv464397	chr7:16709708-16782767	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv606338	chr7:16709708-16782767	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv887760	chr7:16714974-16776257	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16747800-16770600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:16749400-16779000	Weak transcription	Left Ventricle	heart
3	chr7:16759400-16775200	Weak transcription	Stomach Mucosa	stomach
4	chr7:16759600-16779600	Weak transcription	A549	lung
5	chr7:16764000-16770200	Weak transcription	Adipose Nuclei	Adipose
6	chr7:16767000-16767400	Enhancers	K562	blood

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