Variant report

Variant	rs706068
Chromosome Location	chr7:16816577-16816578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1149516	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1149517	1.00[EUR][1000 genomes]
rs1149518	1.00[EUR][1000 genomes]
rs1149520	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs1149521	1.00[EUR][1000 genomes]
rs1149523	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1149525	1.00[EUR][1000 genomes]
rs2177784	1.00[EUR][1000 genomes]
rs55722030	1.00[EUR][1000 genomes]
rs56302012	1.00[EUR][1000 genomes]
rs57776102	1.00[EUR][1000 genomes]
rs6968207	1.00[EUR][1000 genomes]
rs706054	1.00[EUR][1000 genomes]
rs706056	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs706058	1.00[EUR][1000 genomes]
rs706060	1.00[EUR][1000 genomes]
rs706066	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs706067	1.00[EUR][1000 genomes]
rs706069	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73067698	1.00[EUR][1000 genomes]
rs73069705	1.00[EUR][1000 genomes]
rs73069707	1.00[EUR][1000 genomes]
rs73069710	1.00[EUR][1000 genomes]
rs73069712	1.00[EUR][1000 genomes]
rs73069719	1.00[EUR][1000 genomes]
rs73069720	1.00[EUR][1000 genomes]
rs73069724	1.00[EUR][1000 genomes]
rs73069745	1.00[EUR][1000 genomes]
rs73069748	1.00[EUR][1000 genomes]
rs73069757	1.00[EUR][1000 genomes]
rs818492	1.00[EUR][1000 genomes]
rs818807	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs818808	1.00[EUR][1000 genomes]
rs819003	1.00[EUR][1000 genomes]
rs866565	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16795000-16828400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:16800600-16825600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:16802800-16817800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:16803600-16818000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:16803800-16825600	Weak transcription	Fetal Intestine Small	intestine
6	chr7:16805000-16832400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr7:16806400-16821400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr7:16810800-16823200	Weak transcription	Psoas Muscle	Psoas
9	chr7:16810800-16825000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:16811000-16817800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:16811400-16821800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:16811400-16833600	Weak transcription	Fetal Muscle Leg	muscle
13	chr7:16811600-16817800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:16811600-16820800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:16811600-16825000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:16811800-16824800	Weak transcription	Adipose Nuclei	Adipose
17	chr7:16812000-16817800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:16812400-16821600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:16812800-16821000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:16813800-16816600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr7:16813800-16825000	Weak transcription	Stomach Mucosa	stomach
22	chr7:16814000-16834600	Weak transcription	Fetal Brain Male	brain
23	chr7:16814200-16818000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:16814200-16821200	Weak transcription	Left Ventricle	heart
25	chr7:16814200-16824800	Weak transcription	Osteobl	bone
26	chr7:16814200-16825400	Weak transcription	Gastric	stomach
27	chr7:16814200-16826400	Weak transcription	Right Ventricle	heart
28	chr7:16814400-16843800	Weak transcription	Small Intestine	intestine
29	chr7:16815000-16817600	Strong transcription	Primary B cells from cord blood	blood
30	chr7:16815000-16838000	Weak transcription	K562	blood
31	chr7:16815400-16823000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr7:16815800-16817000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr7:16815800-16817800	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:16816000-16817800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr7:16816000-16819000	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr7:16816000-16819800	Weak transcription	Lung	lung
37	chr7:16816000-16825000	Weak transcription	Fetal Brain Female	brain
38	chr7:16816200-16816800	Enhancers	Pancreatic Islets	Pancreatic Islet
39	chr7:16816200-16817000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr7:16816200-16817000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr7:16816200-16817800	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr7:16816200-16817800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr7:16816200-16817800	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links