Variant report

Variant	rs55723562
Chromosome Location	chr6:131765582-131765583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17060275	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17060292	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17655962	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4623265	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55873256	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56133348	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56271417	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62422475	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62422479	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62422481	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62422483	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62422484	0.94[EUR][1000 genomes]
rs62422485	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62422486	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62424698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62424699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67152858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68077748	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6899380	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6909908	0.82[EUR][1000 genomes]
rs6930418	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs714100	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73627637	0.88[AFR][1000 genomes]
rs73627649	0.88[AFR][1000 genomes]
rs7750184	0.96[EUR][1000 genomes]
rs7760164	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7776445	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9483286	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9492982	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs960789	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv1839224	chr6:131703293-131834119	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2829868	chr6:131729859-131898208	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131741600-131772600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:131765000-131765600	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr6:131765200-131765600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr6:131765200-131765600	Enhancers	Dnd41	blood
5	chr6:131765400-131772400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links