Variant report

Variant	rs6899380
Chromosome Location	chr6:131789259-131789260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17060275	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17060292	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17655962	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4623265	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55723562	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55873256	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56133348	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56271417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62422475	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62422479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62422481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62422483	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62422484	0.98[EUR][1000 genomes]
rs62422485	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62422486	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62424698	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62424699	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67152858	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs68077748	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6909908	0.82[EUR][1000 genomes]
rs6930418	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs714100	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7750184	0.92[EUR][1000 genomes]
rs7760164	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7776445	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9483286	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9492982	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs960789	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv1839224	chr6:131703293-131834119	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2829868	chr6:131729859-131898208	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv969444	chr6:131787054-131791399	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131782200-131790400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:131783200-131789800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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