Variant report

Variant	rs55723609
Chromosome Location	chr6:12721509-12721510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58240876	1.00[AFR][1000 genomes]
rs73722808	1.00[AFR][1000 genomes]
rs73722815	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12709000-12722000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:12710600-12723400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:12710800-12729600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:12712600-12725000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:12712800-12724800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:12716800-12724800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:12716800-12729600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:12718600-12722400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:12718600-12723400	Active TSS	Brain Anterior Caudate	brain
10	chr6:12718600-12725000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:12719400-12722600	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr6:12720800-12721800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:12721200-12722000	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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