Variant report

Variant	rs58240876
Chromosome Location	chr6:12725244-12725245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55723609	1.00[AFR][1000 genomes]
rs73722808	1.00[AFR][1000 genomes]
rs73722815	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12710800-12729600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:12716800-12729600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:12723400-12726400	Weak transcription	Brain Anterior Caudate	brain
4	chr6:12724800-12725400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:12724800-12725400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:12724800-12725600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:12724800-12725600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:12724800-12725800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:12725000-12725400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:12725000-12725400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:12725000-12725600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:12725200-12729400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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