Variant report

Variant	rs55724002
Chromosome Location	chr12:121946193-121946194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121906006..121907893-chr12:121944276..121946845,2	K562	blood:
2	chr12:121945860..121947775-chr12:121975322..121977515,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089094	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11065604	0.82[EUR][1000 genomes]
rs55670207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55671311	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55747427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56205591	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs55724002	FBXL10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121911400-121946400	Weak transcription	Pancreas	Pancrea
2	chr12:121924600-121946600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:121926000-121946200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:121928600-121946400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:121928600-121965800	Weak transcription	Hela-S3	cervix
6	chr12:121928800-121946400	Weak transcription	NHLF	lung
7	chr12:121929000-121946200	Weak transcription	Esophagus	oesophagus
8	chr12:121929000-121946400	Weak transcription	Placenta	Placenta
9	chr12:121929200-121946400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr12:121929200-121954200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr12:121932000-121974400	Weak transcription	NHEK	skin
12	chr12:121934800-121968200	Weak transcription	Small Intestine	intestine
13	chr12:121935000-121946600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr12:121935000-121947200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr12:121935000-121951800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr12:121935200-121946400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr12:121938200-121946400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr12:121938200-121949400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr12:121938200-121951800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr12:121938200-121968600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr12:121938200-121971000	Weak transcription	Stomach Mucosa	stomach
22	chr12:121938200-121973800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr12:121938400-121946200	Weak transcription	Primary B cells from cord blood	blood
24	chr12:121938400-121946200	Weak transcription	Adipose Nuclei	Adipose
25	chr12:121938400-121946200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr12:121938400-121946200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr12:121938400-121946200	Weak transcription	HepG2	liver
28	chr12:121938400-121946400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr12:121938400-121946400	Weak transcription	Aorta	Aorta
30	chr12:121938400-121946400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr12:121938400-121949400	Weak transcription	HSMMtube	muscle
32	chr12:121938400-121951600	Weak transcription	A549	lung
33	chr12:121938400-121952400	Strong transcription	Thymus	Thymus
34	chr12:121938400-121957200	Weak transcription	Fetal Lung	lung
35	chr12:121938400-121968600	Weak transcription	Fetal Kidney	kidney
36	chr12:121938400-121973600	Weak transcription	Psoas Muscle	Psoas
37	chr12:121938600-121946400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr12:121938600-121946400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr12:121938600-121946400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr12:121938600-121946400	Weak transcription	Right Ventricle	heart
41	chr12:121938600-121952400	Strong transcription	Fetal Stomach	stomach
42	chr12:121938600-121959800	Weak transcription	NH-A	brain
43	chr12:121938800-121968600	Weak transcription	Right Atrium	heart
44	chr12:121938800-121970600	Weak transcription	Fetal Brain Male	brain
45	chr12:121939000-121951200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr12:121939000-121951200	Strong transcription	Fetal Intestine Small	intestine
47	chr12:121939200-121948400	Strong transcription	Primary B cells from peripheral blood	blood
48	chr12:121939200-121961600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr12:121939400-121951200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr12:121939600-121952600	Strong transcription	HUES48 Cell Line	embryonic stem cell

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