Variant report

Variant	rs55724355
Chromosome Location	chr5:151840785-151840786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 212 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:206)

rs_ID	r²[population]
rs10065026	0.95[EUR][1000 genomes]
rs10069107	0.95[EUR][1000 genomes]
rs10072743	0.95[EUR][1000 genomes]
rs10213914	0.95[EUR][1000 genomes]
rs10476784	0.99[EUR][1000 genomes]
rs10515658	0.98[EUR][1000 genomes]
rs10515660	1.00[EUR][1000 genomes]
rs10515661	1.00[EUR][1000 genomes]
rs10515662	1.00[EUR][1000 genomes]
rs10515663	1.00[EUR][1000 genomes]
rs10515664	1.00[EUR][1000 genomes]
rs10515665	1.00[EUR][1000 genomes]
rs10515667	1.00[EUR][1000 genomes]
rs10515669	1.00[EUR][1000 genomes]
rs10515670	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10515671	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1156932	1.00[EUR][1000 genomes]
rs1156933	1.00[EUR][1000 genomes]
rs1319549	1.00[EUR][1000 genomes]
rs13361745	0.94[EUR][1000 genomes]
rs1363407	0.95[EUR][1000 genomes]
rs1363408	0.95[EUR][1000 genomes]
rs1363409	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1363420	1.00[EUR][1000 genomes]
rs1363421	1.00[EUR][1000 genomes]
rs1422340	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1422341	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1422342	0.95[EUR][1000 genomes]
rs1422343	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1422344	0.95[EUR][1000 genomes]
rs1422356	1.00[EUR][1000 genomes]
rs1422357	1.00[EUR][1000 genomes]
rs1422371	1.00[EUR][1000 genomes]
rs1541651	1.00[EUR][1000 genomes]
rs1541652	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1541653	1.00[EUR][1000 genomes]
rs17448276	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17448379	1.00[EUR][1000 genomes]
rs17448407	1.00[EUR][1000 genomes]
rs17448511	1.00[EUR][1000 genomes]
rs17448739	1.00[EUR][1000 genomes]
rs17448815	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17544525	0.83[EUR][1000 genomes]
rs17545297	1.00[EUR][1000 genomes]
rs17545332	1.00[EUR][1000 genomes]
rs17545367	1.00[EUR][1000 genomes]
rs17545590	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17545665	1.00[EUR][1000 genomes]
rs17545881	1.00[EUR][1000 genomes]
rs17546335	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17546405	1.00[EUR][1000 genomes]
rs17548153	0.95[EUR][1000 genomes]
rs1895245	1.00[EUR][1000 genomes]
rs1946224	1.00[EUR][1000 genomes]
rs1946225	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2042205	1.00[ASN][1000 genomes]
rs2080929	1.00[EUR][1000 genomes]
rs2080930	1.00[EUR][1000 genomes]
rs2194084	1.00[EUR][1000 genomes]
rs2348421	0.98[EUR][1000 genomes]
rs2348422	0.98[EUR][1000 genomes]
rs2348425	1.00[EUR][1000 genomes]
rs2348426	1.00[EUR][1000 genomes]
rs28374977	0.95[EUR][1000 genomes]
rs28495602	0.95[EUR][1000 genomes]
rs28639501	0.95[EUR][1000 genomes]
rs34403527	0.80[EUR][1000 genomes]
rs3763130	1.00[EUR][1000 genomes]
rs3792907	1.00[EUR][1000 genomes]
rs3828684	1.00[EUR][1000 genomes]
rs41290593	1.00[EUR][1000 genomes]
rs4392608	1.00[EUR][1000 genomes]
rs4958303	1.00[EUR][1000 genomes]
rs4958304	1.00[EUR][1000 genomes]
rs4958305	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4958306	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4958307	0.95[EUR][1000 genomes]
rs4958308	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4958531	1.00[EUR][1000 genomes]
rs4958532	1.00[EUR][1000 genomes]
rs4958534	1.00[EUR][1000 genomes]
rs4958535	1.00[EUR][1000 genomes]
rs4958536	1.00[EUR][1000 genomes]
rs4958537	1.00[EUR][1000 genomes]
rs4958541	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4958543	1.00[EUR][1000 genomes]
rs4958544	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4958546	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4958547	0.95[EUR][1000 genomes]
rs4958548	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs55687380	1.00[EUR][1000 genomes]
rs55689355	0.83[EUR][1000 genomes]
rs55696776	0.91[EUR][1000 genomes]
rs55715312	1.00[EUR][1000 genomes]
rs55726523	1.00[AFR][1000 genomes]
rs55761989	0.97[EUR][1000 genomes]
rs55846431	0.91[EUR][1000 genomes]
rs55893124	1.00[EUR][1000 genomes]
rs55911705	0.91[EUR][1000 genomes]
rs55917590	0.83[EUR][1000 genomes]
rs56035517	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56035552	0.98[EUR][1000 genomes]
rs56074869	0.87[EUR][1000 genomes]
rs56091570	0.88[EUR][1000 genomes]
rs56125782	0.98[EUR][1000 genomes]
rs56211663	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56245652	0.98[EUR][1000 genomes]
rs56275648	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs56382127	0.98[EUR][1000 genomes]
rs56392306	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6864518	0.95[EUR][1000 genomes]
rs6864702	0.95[EUR][1000 genomes]
rs6884899	0.95[EUR][1000 genomes]
rs6886963	0.95[EUR][1000 genomes]
rs716256	1.00[EUR][1000 genomes]
rs716257	1.00[EUR][1000 genomes]
rs72791404	0.98[EUR][1000 genomes]
rs72791406	1.00[EUR][1000 genomes]
rs72791407	1.00[EUR][1000 genomes]
rs72791408	1.00[EUR][1000 genomes]
rs72791409	1.00[EUR][1000 genomes]
rs72791410	1.00[EUR][1000 genomes]
rs72791411	1.00[EUR][1000 genomes]
rs72791413	0.97[EUR][1000 genomes]
rs72791415	0.97[EUR][1000 genomes]
rs72791419	1.00[EUR][1000 genomes]
rs72791420	0.98[EUR][1000 genomes]
rs72791421	0.96[EUR][1000 genomes]
rs72791422	1.00[EUR][1000 genomes]
rs72791423	1.00[EUR][1000 genomes]
rs72791424	0.98[EUR][1000 genomes]
rs72791425	1.00[EUR][1000 genomes]
rs72791429	1.00[EUR][1000 genomes]
rs72791432	1.00[EUR][1000 genomes]
rs72791434	1.00[EUR][1000 genomes]
rs72791435	1.00[EUR][1000 genomes]
rs72791439	0.97[EUR][1000 genomes]
rs72791441	1.00[EUR][1000 genomes]
rs72791442	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72791443	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72791445	1.00[EUR][1000 genomes]
rs72791446	1.00[EUR][1000 genomes]
rs72791447	1.00[EUR][1000 genomes]
rs72791449	1.00[EUR][1000 genomes]
rs72791451	1.00[EUR][1000 genomes]
rs72791452	1.00[EUR][1000 genomes]
rs72791454	0.92[EUR][1000 genomes]
rs72791456	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72791458	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs72791461	1.00[EUR][1000 genomes]
rs72791463	1.00[EUR][1000 genomes]
rs72791464	1.00[EUR][1000 genomes]
rs72791468	1.00[EUR][1000 genomes]
rs72791470	1.00[EUR][1000 genomes]
rs72791475	1.00[EUR][1000 genomes]
rs72791477	1.00[EUR][1000 genomes]
rs72791485	1.00[EUR][1000 genomes]
rs72791486	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72791488	1.00[EUR][1000 genomes]
rs72791490	1.00[EUR][1000 genomes]
rs72791492	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72791494	1.00[EUR][1000 genomes]
rs72791495	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72791498	1.00[EUR][1000 genomes]
rs72791499	1.00[EUR][1000 genomes]
rs72793405	0.98[EUR][1000 genomes]
rs72793406	1.00[EUR][1000 genomes]
rs72793407	1.00[EUR][1000 genomes]
rs72793408	1.00[EUR][1000 genomes]
rs72793437	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72793438	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72793439	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72793455	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72793460	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs72793462	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72793463	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72793466	0.91[EUR][1000 genomes]
rs72793468	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72793469	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72793472	0.95[EUR][1000 genomes]
rs72793476	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72793480	0.94[EUR][1000 genomes]
rs72793481	0.95[EUR][1000 genomes]
rs72793485	0.95[EUR][1000 genomes]
rs72793487	0.95[EUR][1000 genomes]
rs72793488	0.95[EUR][1000 genomes]
rs72804360	1.00[ASN][1000 genomes]
rs72806361	1.00[ASN][1000 genomes]
rs72806362	1.00[ASN][1000 genomes]
rs72806368	1.00[ASN][1000 genomes]
rs72806400	1.00[ASN][1000 genomes]
rs72806402	1.00[ASN][1000 genomes]
rs72808320	1.00[ASN][1000 genomes]
rs72808345	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs72808347	0.98[EUR][1000 genomes]
rs72808348	0.98[EUR][1000 genomes]
rs731117	0.95[EUR][1000 genomes]
rs7356769	0.95[EUR][1000 genomes]
rs888877	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs888878	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs888879	0.95[EUR][1000 genomes]
rs957211	0.98[EUR][1000 genomes]
rs982418	1.00[EUR][1000 genomes]
rs982714	1.00[EUR][1000 genomes]
rs982715	1.00[EUR][1000 genomes]
rs982716	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv883048	chr5:151682439-151846236	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv432814	chr5:151682807-151852807	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv432815	chr5:151682807-151875807	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv432816	chr5:151691807-151875807	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1009065	chr5:151838695-151846351	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151839600-151842000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:151840000-151841000	Weak transcription	Fetal Intestine Large	intestine
3	chr5:151840000-151846400	Enhancers	Fetal Intestine Small	intestine

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