Variant report

Variant	rs55724601
Chromosome Location	chr15:59875776-59875777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17269643	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17269649	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28450345	0.84[EUR][1000 genomes]
rs28465501	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28642985	0.85[EUR][1000 genomes]
rs4334235	0.82[EUR][1000 genomes]
rs55646727	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650268	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55677374	0.87[EUR][1000 genomes]
rs55895417	0.95[EUR][1000 genomes]
rs56252156	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56305024	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67098767	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67795737	0.82[EUR][1000 genomes]
rs7176379	0.85[EUR][1000 genomes]
rs7181219	0.84[EUR][1000 genomes]
rs7181242	0.84[EUR][1000 genomes]
rs72751123	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv569605	chr15:59855226-59956553	Strong transcription Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59871600-59879400	Weak transcription	Stomach Mucosa	stomach
2	chr15:59875000-59876200	Enhancers	Duodenum Mucosa	Duodenum
3	chr15:59875200-59875800	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr15:59875600-59879200	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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