Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:59849265-59849444	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59843141..59845344-chr15:59847957..59850222,2	K562	blood:
2	chr15:59848605..59850889-chr15:59851125..59852775,2	K562	blood:

Variant related genes	Relation type
ENSG00000240238	TF binding region
ENSG00000240238	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17269643	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17269649	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28465501	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28642985	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4334235	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55646727	0.83[EUR][1000 genomes]
rs55650268	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55677374	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55724601	0.84[EUR][1000 genomes]
rs55895417	0.84[EUR][1000 genomes]
rs56252156	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56305024	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59344823	0.81[EUR][1000 genomes]
rs67098767	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176379	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7181219	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7181242	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72749183	0.83[ASN][1000 genomes]
rs72749188	0.83[ASN][1000 genomes]
rs72749190	0.83[ASN][1000 genomes]
rs72751123	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv527754	chr15:59848471-59855226	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59841600-59861600	Weak transcription	Gastric	stomach
2	chr15:59843600-59851200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr15:59848200-59850200	Enhancers	K562	blood
4	chr15:59848400-59850200	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr15:59848400-59851000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:59848400-59851000	Weak transcription	Osteobl	bone
7	chr15:59848600-59850200	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr15:59848800-59850600	Weak transcription	Fetal Intestine Small	intestine
9	chr15:59848800-59850600	Weak transcription	A549	lung
10	chr15:59848800-59851200	Enhancers	Hela-S3	cervix
11	chr15:59848800-59851400	Weak transcription	Stomach Mucosa	stomach
12	chr15:59848800-59857600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr15:59849000-59850800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:59849000-59853600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr15:59849200-59850600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:59849400-59851200	Weak transcription	Small Intestine	intestine

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