Variant report

Variant	rs59344823
Chromosome Location	chr15:59840691-59840692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17269643	0.83[EUR][1000 genomes]
rs17269649	0.82[EUR][1000 genomes]
rs28450345	0.81[EUR][1000 genomes]
rs28465501	0.80[EUR][1000 genomes]
rs28642985	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4334235	0.94[ASN][1000 genomes]
rs55650268	0.82[EUR][1000 genomes]
rs55677374	0.80[EUR][1000 genomes]
rs56252156	0.80[EUR][1000 genomes]
rs56305024	0.84[EUR][1000 genomes]
rs67098767	0.80[EUR][1000 genomes]
rs7176379	0.82[EUR][1000 genomes]
rs7181219	0.81[EUR][1000 genomes]
rs7181242	0.81[EUR][1000 genomes]
rs72749183	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72749188	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72749190	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv904279	chr15:59791666-59842927	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59835400-59844200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr15:59836200-59840800	Weak transcription	Colonic Mucosa	Colon
3	chr15:59836400-59842200	Weak transcription	A549	lung
4	chr15:59836400-59845400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:59836800-59841000	Weak transcription	Fetal Intestine Large	intestine
6	chr15:59836800-59841000	Weak transcription	Fetal Intestine Small	intestine
7	chr15:59837200-59842200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr15:59837200-59842200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr15:59837400-59840800	Weak transcription	Hela-S3	cervix
10	chr15:59837400-59841400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr15:59838800-59841000	Weak transcription	Stomach Mucosa	stomach
12	chr15:59838800-59841200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr15:59839000-59847600	Weak transcription	Small Intestine	intestine
14	chr15:59839200-59843200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:59840200-59841600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:59840600-59843000	Enhancers	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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