Variant report

Variant	rs557290396
Chromosome Location	chr8:68093991-68093992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68093632..68095325-chr8:68098007..68100821,2	K562	blood:
2	chr8:67976649..67978941-chr8:68093929..68095807,2	K562	blood:

Variant related genes	Relation type
ENSG00000121022	Chromatin interaction
ENSG00000104218	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016742	chr8:67917418-68125319	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv539639	chr8:67917418-68125319	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1022561	chr8:68011159-68129755	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1024156	chr8:68018110-68130602	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv539640	chr8:68018110-68130602	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1016128	chr8:68019177-68129755	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1028249	chr8:68022357-68127243	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1029236	chr8:68022357-68129755	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv1020062	chr8:68022357-68135111	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
10	nsv1025996	chr8:68025803-68129755	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
11	nsv1019276	chr8:68026084-68130602	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
12	nsv539641	chr8:68026084-68130602	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
13	nsv1026508	chr8:68038761-68135111	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
14	nsv971660	chr8:68093673-68102114	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68074800-68106200	Weak transcription	Colonic Mucosa	Colon
2	chr8:68075000-68107200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr8:68075200-68136800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:68075400-68102200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr8:68075400-68104600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr8:68075600-68102800	Weak transcription	Psoas Muscle	Psoas
7	chr8:68075800-68110800	Weak transcription	HepG2	liver
8	chr8:68075800-68112200	Weak transcription	Stomach Mucosa	stomach
9	chr8:68076000-68103000	Weak transcription	NHDF-Ad	bronchial
10	chr8:68076000-68107000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr8:68076800-68109000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr8:68077200-68108000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr8:68078800-68110400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr8:68079000-68094400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:68084600-68094200	Strong transcription	Liver	Liver
16	chr8:68084600-68094400	Strong transcription	Fetal Muscle Leg	muscle
17	chr8:68084600-68098400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:68084800-68094200	Strong transcription	Primary T cells from cord blood	blood
19	chr8:68085000-68095800	Strong transcription	Fetal Lung	lung
20	chr8:68085200-68095800	Strong transcription	Dnd41	blood
21	chr8:68085400-68095600	Strong transcription	NH-A	brain
22	chr8:68086200-68094000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:68086400-68096600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:68086600-68095000	Weak transcription	Hela-S3	cervix
25	chr8:68086800-68095600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr8:68087000-68094400	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr8:68087000-68095600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr8:68087000-68096000	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr8:68087200-68094400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr8:68087200-68095800	Strong transcription	Duodenum Mucosa	Duodenum
31	chr8:68087200-68096000	Strong transcription	Placenta	Placenta
32	chr8:68087400-68094200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr8:68087400-68095600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:68087400-68095600	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr8:68087600-68095000	Strong transcription	Brain Inferior Temporal Lobe	brain
36	chr8:68087600-68095000	Strong transcription	A549	lung
37	chr8:68087800-68094600	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr8:68088000-68094200	Strong transcription	Brain Germinal Matrix	brain
39	chr8:68088000-68105600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr8:68088000-68107000	Weak transcription	HUVEC	blood vessel
41	chr8:68088200-68102800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr8:68088200-68103000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr8:68088200-68106000	Weak transcription	Fetal Brain Male	brain
44	chr8:68088200-68107400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr8:68088200-68107400	Weak transcription	Spleen	Spleen
46	chr8:68088200-68110800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr8:68088200-68111000	Weak transcription	Fetal Kidney	kidney
48	chr8:68088200-68111600	Weak transcription	Gastric	stomach
49	chr8:68088400-68103000	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr8:68088400-68107200	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links