Variant report

Variant	rs55732061
Chromosome Location	chr18:45555613-45555614
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45555494..45557738-chr18:45683737..45686680,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56003937	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57948319	0.80[EUR][1000 genomes]
rs61345002	0.82[EUR][1000 genomes]
rs61555363	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1055669	chr18:45513090-45559375	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv274948	chr18:45552290-45557862	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45549200-45556000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:45549200-45557600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:45550400-45556400	Weak transcription	Fetal Intestine Small	intestine
4	chr18:45550400-45563400	Weak transcription	Stomach Mucosa	stomach
5	chr18:45550600-45564000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr18:45550800-45557800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr18:45550800-45559600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr18:45550800-45560200	Weak transcription	Gastric	stomach
9	chr18:45550800-45563000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr18:45551200-45561600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr18:45552600-45565200	Weak transcription	Colonic Mucosa	Colon
12	chr18:45553600-45555800	Enhancers	HMEC	breast
13	chr18:45553800-45556400	Genic enhancers	Esophagus	oesophagus
14	chr18:45554000-45557600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr18:45554200-45557800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr18:45554200-45559600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr18:45554200-45559600	Weak transcription	Osteobl	bone
18	chr18:45554200-45563400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr18:45554200-45567800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr18:45554400-45557600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr18:45554400-45557600	Weak transcription	Left Ventricle	heart
22	chr18:45554400-45559600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr18:45554400-45560200	Weak transcription	Lung	lung
24	chr18:45554400-45562200	Weak transcription	Fetal Kidney	kidney
25	chr18:45554400-45563000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr18:45554400-45567600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr18:45554600-45556000	Weak transcription	Right Ventricle	heart
28	chr18:45554600-45557600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr18:45554600-45557600	Weak transcription	Ovary	ovary
30	chr18:45554600-45557800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr18:45554600-45559200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr18:45554600-45560000	Weak transcription	Placenta	Placenta
33	chr18:45554600-45560800	Weak transcription	Brain Substantia Nigra	brain
34	chr18:45554800-45557600	Weak transcription	Spleen	Spleen
35	chr18:45554800-45560200	Weak transcription	Fetal Stomach	stomach
36	chr18:45554800-45563400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr18:45555000-45557400	Weak transcription	Fetal Muscle Leg	muscle
38	chr18:45555000-45563800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr18:45555000-45564000	Weak transcription	Adipose Nuclei	Adipose
40	chr18:45555200-45555800	Enhancers	Hela-S3	cervix
41	chr18:45555200-45556200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr18:45555200-45559400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr18:45555400-45556400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr18:45555400-45559600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr18:45555400-45559600	Weak transcription	NHEK	skin
46	chr18:45555400-45562200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr18:45555600-45557200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr18:45555600-45557600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr18:45555600-45559600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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