Variant report

Variant	rs56003937
Chromosome Location	chr18:45555374-45555375
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45550183..45552921-chr18:45552993..45555401,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZBTB7C-2	chr18:45553703-45555546	NONHSAT059180

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55732061	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57948319	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs61345002	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs61555363	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs72918138	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72918141	0.81[AMR][1000 genomes]
rs72918150	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1055669	chr18:45513090-45559375	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv274948	chr18:45552290-45557862	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45547200-45555600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr18:45549200-45556000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:45549200-45557600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr18:45550400-45556400	Weak transcription	Fetal Intestine Small	intestine
5	chr18:45550400-45563400	Weak transcription	Stomach Mucosa	stomach
6	chr18:45550600-45564000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr18:45550800-45557800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr18:45550800-45559600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr18:45550800-45560200	Weak transcription	Gastric	stomach
10	chr18:45550800-45563000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr18:45551200-45561600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr18:45552600-45565200	Weak transcription	Colonic Mucosa	Colon
13	chr18:45553600-45555800	Enhancers	HMEC	breast
14	chr18:45553800-45555400	Enhancers	A549	lung
15	chr18:45553800-45556400	Genic enhancers	Esophagus	oesophagus
16	chr18:45554000-45557600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr18:45554200-45557800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr18:45554200-45559600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr18:45554200-45559600	Weak transcription	Osteobl	bone
20	chr18:45554200-45563400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr18:45554200-45567800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr18:45554400-45555400	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr18:45554400-45557600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr18:45554400-45557600	Weak transcription	Left Ventricle	heart
25	chr18:45554400-45559600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr18:45554400-45560200	Weak transcription	Lung	lung
27	chr18:45554400-45562200	Weak transcription	Fetal Kidney	kidney
28	chr18:45554400-45563000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr18:45554400-45567600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr18:45554600-45555600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr18:45554600-45556000	Weak transcription	Right Ventricle	heart
32	chr18:45554600-45557600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr18:45554600-45557600	Weak transcription	Ovary	ovary
34	chr18:45554600-45557800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr18:45554600-45559200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr18:45554600-45560000	Weak transcription	Placenta	Placenta
37	chr18:45554600-45560800	Weak transcription	Brain Substantia Nigra	brain
38	chr18:45554800-45555400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr18:45554800-45555400	Enhancers	Duodenum Mucosa	Duodenum
40	chr18:45554800-45555400	Enhancers	NHEK	skin
41	chr18:45554800-45557600	Weak transcription	Spleen	Spleen
42	chr18:45554800-45560200	Weak transcription	Fetal Stomach	stomach
43	chr18:45554800-45563400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr18:45555000-45555400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr18:45555000-45557400	Weak transcription	Fetal Muscle Leg	muscle
46	chr18:45555000-45563800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr18:45555000-45564000	Weak transcription	Adipose Nuclei	Adipose
48	chr18:45555200-45555800	Enhancers	Hela-S3	cervix
49	chr18:45555200-45556200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr18:45555200-45559400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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