Variant report

Variant	rs55733349
Chromosome Location	chr6:71432826-71432827
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10945242	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11962454	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12190398	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12190869	0.90[ASN][1000 genomes]
rs12201672	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12210698	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1333965	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62419707	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62419724	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62419729	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62419736	0.90[ASN][1000 genomes]
rs62419740	0.83[ASN][1000 genomes]
rs62419741	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886147	chr6:71273253-71471863	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71420000-71435200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:71420000-71436800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:71422000-71435200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:71425400-71442600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:71426200-71443800	Weak transcription	Lung	lung
6	chr6:71426200-71451000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:71426400-71443000	Weak transcription	Primary B cells from cord blood	blood
8	chr6:71427200-71435000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:71427200-71439600	Weak transcription	Pancreas	Pancrea
10	chr6:71427400-71442600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:71427400-71444200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:71427600-71433000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:71427600-71442600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:71428000-71442600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr6:71428200-71434200	Weak transcription	Primary T cells from cord blood	blood
16	chr6:71428200-71476400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:71430200-71442400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:71430600-71439600	Weak transcription	Left Ventricle	heart
19	chr6:71432200-71434400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:71432600-71433200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:71432600-71433600	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr6:71432800-71433800	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr6:71432800-71434400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:71432800-71435800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:71432800-71436000	Enhancers	Primary T helper cells PMA-I stimulated	--

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