Variant report

Variant	rs62419740
Chromosome Location	chr6:71574369-71574370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10945242	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11962454	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12190398	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12190869	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12201672	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12210698	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1333965	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55733349	0.83[ASN][1000 genomes]
rs62419707	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62419724	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62419729	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62419736	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62419741	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71550000-71575400	Weak transcription	Ovary	ovary
2	chr6:71554400-71574400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:71556600-71574400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:71558800-71575000	Weak transcription	HUVEC	blood vessel
5	chr6:71564000-71575800	Weak transcription	Right Ventricle	heart
6	chr6:71569000-71575600	Weak transcription	Gastric	stomach
7	chr6:71569200-71574400	Weak transcription	HSMMtube	muscle
8	chr6:71569200-71574600	Weak transcription	Esophagus	oesophagus
9	chr6:71569200-71574600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:71571400-71575000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:71571600-71574600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:71571600-71574600	Weak transcription	Primary B cells from cord blood	blood
13	chr6:71571600-71574600	Weak transcription	Adipose Nuclei	Adipose
14	chr6:71571600-71576400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:71571600-71584000	Weak transcription	Pancreas	Pancrea
16	chr6:71572000-71575800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:71572800-71574800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:71572800-71574800	Enhancers	Thymus	Thymus
19	chr6:71573400-71574600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:71573400-71574600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:71573400-71574800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:71573400-71574800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:71573600-71574400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr6:71573600-71574800	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr6:71573800-71574400	Enhancers	H9 Cell Line	embryonic stem cell
26	chr6:71573800-71574400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:71573800-71574600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:71573800-71574600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:71574000-71574400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr6:71574000-71574400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:71574000-71574400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:71574000-71574400	Enhancers	Left Ventricle	heart
33	chr6:71574000-71574800	Enhancers	H1 Cell Line	embryonic stem cell
34	chr6:71574000-71574800	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr6:71574000-71574800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:71574200-71574400	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr6:71574200-71574400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:71574200-71574400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr6:71574200-71574400	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr6:71574200-71574400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:71574200-71574400	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr6:71574200-71574400	Enhancers	Brain Germinal Matrix	brain
43	chr6:71574200-71574600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr6:71574200-71574600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:71574200-71574600	Enhancers	Fetal Thymus	thymus

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