Variant report

Variant	rs557354087
Chromosome Location	chr1:223565813-223565814
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:223565773-223565823	HAEpiC	amniotic membrane:	n/a
2	chr1:223565773-223565823	HL-60	blood:	n/a
3	chr1:223565773-223565823	ovcar-3	ovarian:	n/a
4	chr1:223565773-223565823	HIPEpiC	eye:	n/a
5	chr1:223565773-223565823	HUVEC	blood vessel:	n/a
6	chr1:223565773-223565823	NHBE	bronchial:	n/a
7	chr1:223565773-223565823	BE2_C	brain:	n/a
8	chr1:223565773-223565823	K562	blood:	n/a
9	chr1:223565773-223565823	MCF-7	breast:	n/a
10	chr1:223565773-223565823	NH-A	brain:	n/a
11	chr1:223565773-223565823	NT2-D1	testis:	n/a
12	chr1:223565773-223565823	HEK293	kidney:	embryo
13	chr1:223565773-223565823	RPTEC	kidney:	n/a
14	chr1:223565773-223565823	NHDF-neo	bronchial:	n/a
15	chr1:223565773-223565823	Hela-S3	cervix:	n/a
16	chr1:223565773-223565823	AoSMC	blood vessel:	n/a
17	chr1:223565773-223565823	HCT-116	colon:	n/a
18	chr1:223565773-223565823	HEEpiC	esophagus:	n/a
19	chr1:223565773-223565823	IMR90	lung:	fetal
20	chr1:223565773-223565823	Jurkat	blood:	n/a
21	chr1:223565773-223565823	GM12892	blood:	n/a
22	chr1:223565773-223565823	Hepatocyte	liver:	n/a
23	chr1:223565773-223565823	PrEC	prostate:	n/a
24	chr1:223565773-223565823	SK-N-MC	brain:	n/a
25	chr1:223565773-223565823	HCPEpiC	choroid plexus:	n/a
26	chr1:223565773-223565823	GM12891	blood:	n/a
27	chr1:223565773-223565823	AG10803	skin:	n/a
28	chr1:223565773-223565823	LNCaP	prostate:	n/a
29	chr1:223565773-223565823	HCF	heart:	n/a
30	chr1:223565773-223565823	SAEC	small airway:	n/a
31	chr1:223565773-223565823	GM12878	blood:	n/a
32	chr1:223565773-223565823	PANC-1	pancreas:	n/a
33	chr1:223565773-223565823	ECC-1	luminal epithelium:	n/a
34	chr1:223565773-223565823	HRCEpiC	kidney:	n/a
35	chr1:223565773-223565823	AG09319	gingival:	n/a
36	chr1:223565773-223565823	SK-N-SH	brain:	n/a
37	chr1:223565773-223565823	SK-N-SH_RA	brain:	n/a
38	chr1:223565773-223565823	HRPEpiC	eye:	n/a
39	chr1:223565773-223565823	AG09309	skin:	n/a
40	chr1:223565773-223565823	HCM	heart:	n/a
41	chr1:223565773-223565823	MCF10A-Er-Src	breast:	n/a
42	chr1:223565773-223565823	HMEC	breast:	n/a
43	chr1:223565773-223565823	SKMC	muscle:	n/a
44	chr1:223565773-223565823	GM06990	blood:	n/a
45	chr1:223565773-223565823	NB4	blood:	n/a
46	chr1:223565773-223565823	AG04449	skin:	fetal
47	chr1:223565773-223565823	HPAEpiC	pulmonary alveolar:	n/a
48	chr1:223565773-223565823	HRE	kidney:	n/a
49	chr1:223565773-223565823	U87	brain:	n/a
50	chr1:223565773-223565823	H1-hESC	embryonic stem cell:	embryo

No data

Variant related genes	Relation type
C1orf65	CpG island

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv4687	chr1:223565080-223610362	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223563800-223566200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:223565800-223566000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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