Variant report

Variant	rs55743446
Chromosome Location	chr7:80584946-80584947
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10231141	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10243643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10244594	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28377907	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28401444	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28872523	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56377260	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57025586	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57083498	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57220140	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57552810	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57888066	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58255502	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59021088	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60182569	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60539054	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60766005	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73376678	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv888548	chr7:80553950-80587737	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv888549	chr7:80553950-80652059	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv888550	chr7:80584388-80644661	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80573200-80589600	Weak transcription	NHLF	lung
2	chr7:80574000-80585400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:80583600-80588800	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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