Variant report

Variant	rs55745013
Chromosome Location	chr7:136866704-136866705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17168975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59232385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61335916	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6952296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6969960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73727873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73727875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73727876	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73727888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73727889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73727896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73727897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73727898	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7804759	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7804917	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv464730	chr7:136825522-136882925	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv608463	chr7:136825522-136882925	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136865800-136866800	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr7:136866000-136866800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr7:136866000-136866800	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr7:136866200-136866800	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr7:136866200-136866800	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr7:136866400-136866800	Active TSS	H1 Cell Line	embryonic stem cell
7	chr7:136866400-136866800	Active TSS	H9 Cell Line	embryonic stem cell
8	chr7:136866400-136866800	Active TSS	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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