Variant report
| Variant | rs73727888 |
|---|---|
| Chromosome Location | chr7:136889572-136889573 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-PTN-4 | chr7:136889380-136889587 | NONHSAT123576 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs17168975 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55745013 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59232385 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61335916 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6952296 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6969960 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73727873 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73727875 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73727876 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73727889 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73727896 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73727897 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73727898 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7804759 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7804917 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7806253 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029192 | chr7:136433278-137147566 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | esv2753059 | chr7:136633745-136893745 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv831149 | chr7:136831665-137006468 | Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv608464 | chr7:136882925-136935459 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv967499 | chr7:136886596-136892139 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv608465 | chr7:136888610-136935459 | Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:136887000-136897200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
