The 2.0 version of rSNPBase

Variant report

Variant rs55747013
Chromosome Location chr5:154350543-154350544
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:154321800-154352200 Weak transcription Right Ventricle heart
2 chr5:154322600-154364600 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr5:154327600-154351600 Weak transcription Fetal Heart heart
4 chr5:154335600-154350600 Strong transcription Primary T helper cells fromperipheralblood blood
5 chr5:154336800-154350600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr5:154338400-154351800 Strong transcription Breast Myoepithelial Primary Cells Breast
7 chr5:154339200-154355400 Weak transcription Gastric stomach
8 chr5:154339200-154361200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr5:154339400-154355400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr5:154339400-154355400 Weak transcription Pancreas Pancrea
11 chr5:154339400-154355600 Weak transcription Lung lung
12 chr5:154339600-154356200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr5:154340200-154357200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr5:154341400-154366600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr5:154342800-154363400 Weak transcription Brain Germinal Matrix brain
16 chr5:154343400-154356800 Weak transcription Hela-S3 cervix
17 chr5:154344800-154356400 Weak transcription HMEC breast
18 chr5:154345000-154357000 Weak transcription ES-WA7 Cell Line embryonic stem cell
19 chr5:154346000-154356800 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr5:154346200-154352000 Weak transcription NHLF lung
21 chr5:154346400-154355400 Weak transcription Fetal Stomach stomach
22 chr5:154346400-154357200 Weak transcription Aorta Aorta
23 chr5:154346800-154352000 Weak transcription Colonic Mucosa Colon
24 chr5:154346800-154355000 Weak transcription Primary T killer memory cells from peripheral blood blood
25 chr5:154346800-154357000 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr5:154347600-154354400 Weak transcription Brain Inferior Temporal Lobe brain
27 chr5:154348000-154350800 Weak transcription Brain Angular Gyrus brain
28 chr5:154348000-154350800 Strong transcription GM12878-XiMat blood
29 chr5:154348000-154351200 Weak transcription Brain Cingulate Gyrus brain
30 chr5:154348000-154351400 Weak transcription iPS-20b Cell Line embryonic stem cell
31 chr5:154348000-154352000 Weak transcription Dnd41 blood
32 chr5:154348000-154353800 Weak transcription Primary monocytes fromperipheralblood blood
33 chr5:154348200-154351200 Weak transcription Brain Hippocampus Middle brain
34 chr5:154348200-154351200 Weak transcription Brain Substantia Nigra brain
35 chr5:154348200-154352400 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr5:154348400-154354800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr5:154348400-154356800 Weak transcription Left Ventricle heart
38 chr5:154348400-154357400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr5:154348600-154355400 Weak transcription Primary B cells from peripheral blood blood
40 chr5:154348600-154355600 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr5:154348600-154355800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
42 chr5:154348600-154360200 Weak transcription Fetal Brain Female brain
43 chr5:154348800-154350800 Weak transcription Adipose Nuclei Adipose
44 chr5:154348800-154352000 Weak transcription HUES48 Cell Line embryonic stem cell
45 chr5:154348800-154352000 Weak transcription Fetal Muscle Trunk muscle
46 chr5:154348800-154352400 Weak transcription Placenta Placenta
47 chr5:154348800-154353000 Weak transcription Fetal Thymus thymus
48 chr5:154348800-154353200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr5:154348800-154353600 Weak transcription Psoas Muscle Psoas
50 chr5:154348800-154355400 Weak transcription Thymus Thymus

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Last update: Aug 31, 2015